eChapters

The articulations of hind limb (pelvic limb) comprises the joints of pelvic region which include the sacro-iliac articulation, pelvic symphysis and the hip joint; the articulation of thigh region named as stifle joint; the articulation of tarsal or hock joint and the articulations of digits which include the metatarso-phalangeal joint (fetlock) joint, the proximal interphalangeal joint (pastern joint) and the distal interphalangeal joint (coffin joint). The joints of pelvic region especially the sacro-iliac joint and the pelvic symphysis have been described with the articulations of abdomen and pelvis.

Analytical methods for study of soil microbes

The analytical techniques for study of soil microbes are grouped under the following heads :

• Determination of form and arrangement of microorganisms in soil
• Isolation and characterization of soil microorganisms
• Detection of microbial activity in soil
• Determination of microbial biomass.

For the above, the different analytical methods used are described below.

Abstract

Women in India constitute a larger proportion of total unemployed population and hence it is imperative to find out the entrepreneurial problems faced by them. A study was conducted with the objectives to ascertain the financial, marketing and production problems faced by women in their enterprises and assessment of their health status and work place facilities. Boutiques, beauty parlors, embroidery units, fruit and vegetable preservation units and artificial jewelry making were the enterprises selected for study. The results of the study revealed that women faced problems in areas like finance, marketing, health, work place and production. Some recommendations of the study are a) Women entrepreneurs should keep abreast of knowledge about new techniques, financial institutions, training institutions and marketing linkages. b) Information about site or location, physical facilities, transportation etc. must be collected prior to selection of area for development of an enterprise. c) Self help mutually aided groups must be formulated for overcoming common entrepreneurial problems. d) Women should shift to the non-traditional sectors of entrepreneurship in order to earn more.

Abstract

Participation of rural women and youth in beekeeping activities provides a unique opportunity to improve rural livelihood and poverty reduction. Women have explored their own niche in beekeeping industry by actively engaging in post harvesting of bee products. Income generation is one of the major reasons for participating in beekeeping activities and beekeeping was ranked number one at the same level as agriculture as major source of income. Post harvesting beekeeping, however, needs liquid capital investment which, limit women and youth to fully participate in the business. Cultural practices are also one of the main hindrances for adult women and youth to participate in beekeeping activities. Nonetheless, presence of beekeeping groups and associations, community banks, forest reserves and beekeeping awareness campaigns in the areas provided opportunities for women and youth to participate in beekeeping. Beekeeping represents one opportunity for income generation which need not be time consuming and can fit in well with women’s priority activities. women be given the opportunity to start beekeeping, it is important that all beekeeping development programs ensure from the outset that extension messages reach rural women, and that they are able to take full advantage of training and credit facilities.

There are several species in this cosmopolitan family that are of importance chiefly as pests of stored foods, flour, grain, seeds and bulbs, feeding on these products or the fungi that develop on them. These mites are mostly very minute, almost colourless, with the body bearing a few long setae, and with the legs terminating in one claw and usually a sucker. When very abundant the mites and their cast skins form a buff-colored dust and give rise to a characteristic odour. The living mites move slowly away from a source of light. An interesting characteristic of these mites is a nymphal resting stage (hypopus) during which they take no food but attach themselves to other mites, insects and humans by means of suckers and are thereby transported to other suitable places for development, where they drop off, moult, feed, and develop into adult stage. The hypopus may be resistant to fumigants. However, the cheese mites, Tyrophagus casei do not have a hypopial stage. Prolonged storage of products subject to infestation without cleaning of pantries and shelves where such materials are placed. These mites can subsist on organic debris in cracks, crevices and corners and are readily spread to other areas.

It is interesting to note that only 25 of about 1200 species of birds found in India have been reported to inflict damage to crops, vegetables and fruits. The exact ecological causes for population increase of individual species have yet to be studied. It would appear that, in general, the granivorous birds became abundant with the increase in area under grain crops and the subsequent storage of grain in godowns and bulk storage. The details of important bird pests are given below:

As the name indicates, micro-organisms are very minute, cellular, living organisms which cannot be seen with the naked eyes (however, large colonies of fungi can be seen). Micro-organisms affecting stored grain can be divided into the following groups in order of their significance:

1. Fungi
2. Actinomycetes
3. Yeast
4. Bacteria
5. Protozoa (not found in sound food grains)

Fungi, bacteria and actinomycetes are grouped under the Thallophyta of the plant kingdom. The most important factors for their normal development are: (i) Nature of Food, (ii) Moisture, (iii) Oxygen and (iv) Temperature.

Model organisms are widely used in biological researches to describe basic biological processes. When selecting living organisms as models to work with, a wide range of characteristics are used which include: 1) rapid development with short life cycles, 2) small adult size, 3) ready availability and 4) tractability. Being small, growing rapidly and being readily available are crucial in terms of housing them, given the budget and space limitations of research and teaching laboratories. Tractability relates to the ease with which they can be manipulated. Many model organisms have been used including fruit fly, Drosophila melanogaster, the most obvious organism used for teaching Mendelian genetics and developmental biology; Escherichia coli, a favoured organism for molecular biological studies involving recombinant DNA technology. Research into the molecular and developmental biology of C. elegans was begun in 1974 by Sydney Brenner and it has since been used extensively as a model organism.

C. elegans is a popular research organism as it possesses all the characteristics mentioned, yet shares many essential biological properties with humans. For instance, researchers who study apoptosis (programmed cell death) use C. elegans as an experimental organism in the hope of finding treatments for certain types of human cancers, such as leukaemia.

C. elegans is easy and inexpensive to maintain in laboratory conditions with a diet of E. coli. Embryogenesis occurs in about 12 hours, development to the adult stage occurs in 2.5 days and the life span is 2-3 weeks. The short, hermaphroditic life cycle (~3 days) and large number (300+) of offspring of C. elegans allows large-scale production of animals within a short period of time. Since C. elegans has a small body size, in vivo assays can be conducted in a 96 well microplate. Laboratory stocks of C. elegans can even be stored in liquid nitrogen for 25 years without losing their viability. The transparent body allows clear observation of all cells in mature and developing animals. Furthermore, the intensively studied genome, complete cell lineage map, knockout (KO) mutant libraries and established genetic methodologies including mutagenesis, transgenesis and RNA interference (RNAi) provide a variety of options to manipulate and study C. elegans at the molecular level and for a more detailed presentation of genetic and genomic resources.

Objectives

• Better understand the process and different stages of mitosis.
• Prepare your own specimens of onion root in which you can visualize all of the stages of mitosis.

Principle

The genetic information of plants, animals and other eukaryotic organisms resides in several (or many) individual DNA molecules, or chromosomes. For example, each human cell possesses 46 chromosomes, while each cell of an onion possesses 8 chromosomes. All cells must replicate their DNA when dividing.

DNA replication in eukaryotes is followed by the process called mitosis which assures that each daughter cell receives one copy of each of the replicated chromosomes. During the process of mitosis, the chromosomes pass through several stages known as prophase, metaphase, anaphase and telophase. The actual division of the cytoplasm is called cytokinesis and occurs during telophase. During each of the preceding stages, particular events occur that contribute to the orderly distribution of the replicated chromosomes prior to cytokinesis.

An onion root tip is a rapidly growing part of the onion and thus many cells will be in different stages of mitosis. The onion root tips can be prepared and squashed in a way that allows them to be flattened on a microscopic slide, so that the chromosomes of individual cells can be observed easily. The super coiled chromosomes during different stages of mitosis present in the onion root tip cells can be visualized by treating with DNA specific stains, like Feulgen stain and Acetocarmine stain.

Objectives

• Better understand the dihybrid cross.
• Calculation of dihybrid phenotypic, genotypic and testcross ratios.

Principle

A cross is made between two true-breeding parents differing in two pairs of genes, producing an F₁ generation. These plants are inter-crossed to produce an F₂ generation. Mendel second law i.e., Law of independent assortment can be explained by studying the inheritance of two characters at a time, simultaneously. When two phenotypically distinct parents differing with respect to two characters governed by two pair of genes are crossed together. Each pair of genes assorts independently into all possible combination forming four kinds of progeny, two of these are parental type and two are recombinant types.

Objectives

• Better understand the phenomenon of multiple alleles.

Introduction

The word allele is a general term to denote the alternative forms of a gene or contrasting gene pair that denote the alternative form of a gene is called allele. These alleles were previously considered by Bateson as hypothetical partner in Mendelian segregation. Mendel and his followers used the term ‘allele’ or ‘alleleomorph’ to denote the alternative form of the normal gene. It means the genes for tall and dwarf characters of pea plant are alleles. The former is normal or wild allele and the later is mutant allele. A gene can mutate several times producing several alternative expressions. When three or more alleles are found for any particular gene, these are called ‘multiple alleles’. These occupy the same locus in homologous chromosomes.

Multiple alleles are defined as genes that are members of the same gene pair and are located on the same locus. All of them control the same character but each of the allele affects that character somewhat differently than the others. In any diploid organism, a particular gene pair is represented by two alleles of the series, one allele on each of the two chromosomes of a homologous pair. This is because an organism has just two chromosomes of each type. These form a homologous pair. However, in the individuals of a population or species, many alternative forms of the same gene may be present. The grouping of all the possible alleles of a gene pair is defined as a system of multiple alleles and their mode of inheritance is called multiple allelism. The multiple allele system can be represented as A1, A2, A3, A4 etc.

Self-Incompatibility

This is lack of self-fruitfulness and is a condition where the pollen from a flower is not receptive on the stigma of the same flower resulting into no seed setting. This happens despite the fact that pollen and ovule development both are normal and viable. This is caused by genetically controlled physiological hindrance to self-fertilization. This occurs widely among diverse families of flowering plants including the Leguminosae, Onagraceae, Rosaceae, Scrophulariaceae, Solanaceae, Compositae, Cruciferae, Papaveraceae and the Gramineae (now called as Poaceae). The incompatibility reaction is genetically governed by a single locus designated as S with multiple alleles whose number can go more than 100 in some species such as Trifolium pretense. East has estimated that this occurs in more than 3000 plant species distributed over 20 families. Lewis classified incompatibility systems into two main groups, namely, heteromorphic and homomorphic and homomorphic system has further been divided into gametophytic and sporophytic types as illustrated below:

Heterosis or hybrid vigour is the condition where an F1 hybrid falls outside the range of the parents with respect to some character or characters. It is also defined as a manifestation of heterozygosity, expressed as increased vigour, size, fruitfulness and resistance to diseases, insects or climate extremes. It has been observed in nearly every crop including both self and cross-pollinated crops. It is converse of inbreeding depression. However, even the species that show little or no inbreeding depression, often benefit from crossing and resultant hybrids. Therefore, heterosis has been more emphasized than the inbreeding depression. It is defined in two basic ways:

Any phenotype is the result of interaction of genotype and the environment. Any genotype cannot express itself unless proper environment for its expression is made available. Likewise, environment cannot create any phenotype unless a genotype is there to be acted upon by the environment. However, the effect of genotype and the environment is not fixed, its keeps on changing depending upon the relative role of the genotype. Heritability therefore specifies the proportion of the total phenotypic variability that is due to genetic causes. In other words, heritability is defined as the ratio of genetic variance to the total phenotypic variance. Heritability is the degree to which the characteristics of a plant are repeated and expressed in the progeny. This can be expressed quantitatively as follows:

Heritability (h²) = Genotypic variance/Phenotypic variance

Initially, exploitation of heteosis was confined to corn and a few other open- pollinated crops but presently heterosis is being exploited practically in all species cutting across mode of reproduction. More and more evidences are emerging that heterotic expression in a cross is a function of genetic backgrounds and genes. Heterotic grouping would remain a key strategy in management of diverse genetic backgrounds and genes for full exploitation of heterosis. The commonly used methods in developing hybrids in self- pollinated crops are listed and explained as follows:

Manual emasculation and Pollination Method

In this method, female parent flower buds are emasculated manually and the emasculated buds are pollinated by the pollen grain collected from protected flowers of the male parent. This method is effective and successful where the crossed fruits produce plenty of seeds and the seed requirement for planting the commercial hybrid seed is much less. Consequently, this method is being used in a routine manner on a commercial scale in vegetable crops mostly by private sector seed companies in India and south-east Asian countries. The crops covered under this method of hybrid seed production are as follows:

Tomato, hot-pepper, sweet pepper, eggplant, okra, bottle gourd, bitter gourd, ridge gourd, smooth gourd, cucumber, pumpkin, water melon and muskmelon. Cucurbits are included here as although they are cross-pollinated but behave like self-pollinated crops in terms of almost no inbreeding depression.

Chi-Square

The Chi-square test (c₂) proposed by Karl Pearson in 1899 is used to measure goodness of fit of observed and theoretical or expected data and is a continuous distribution.

Formula for Chi-Square

1. General Formula

The general formula for Chi-square is as follows

Translocations

Chromosomes occasionally undergo spontaneous rupture or can be induced to rupture in high frequency by ionizing radiation. The broken ends of such chromosomes behave as though they were ‘sticky’ and may rejoin into non- homologous combinations giving rise to translocations. The most common type of translocation is reciprocal translocation which involves the exchange of segments between two non-homologous chromosomes. Translocations change only the arrangement of genes in the chromosomes, not the quality or quantity of genes. For this reason, they are sometimes referred to as chromosomal rearrangements. Individuals carrying such rearrangements should be phenotypically entirely normal unless the relations of a gene or genes to adjacent genes affect the phenotypic expression (position effect). The first translocation was discovered by Bridges in 1923 in D. melanogaster.

The genetic techniques for detecting and studying translocations will be more easily understood when the cytological phenomena produced by translocations are known. Suppose two chromosomes having respectively the genes ABCDEF and GHIJKL exchange sections and give rise to translocation chromosomes ABCJKL and GHIDEF. The individual thus formed receives from one of the parents the normal and from the other parent the translocation chromosome. Such an individual is a translocation heterozygote (Fig. 36.1).

Watson and Crick based on their double helical DNA model, offered to explain DNA replication by a method where each single strand of DNA is template or mold for its complement and a new helix has one old strand and one newly synthesized strand. This type of DNA replication is called as semi-conservative as in this method one old strand is retained and one new complementary strand is synthesized. In contrast to semi-conservative mode of DNA replication, two more modes of DNA replication were proposed. One is conservative type where two new strands are synthesized in form of a double helix while the old double helix remains unchanged. The third type of DNA replication proposed has been dispersive mode of DNA replication which amounts to breaking down of double helical strands into small pieces along the length, their replication and random assemblage with newly synthesized pieces to form a patchwork single string of dispersed old and new pieces. These three modes of replication of DNA molecule are shown in Fig. 40.1.

In transcription, it has become clear as to how there is the transfer of genetic information stored in the sequence of nucleotides-pairs in DNA to the sequence of nucleotides in m-RNA molecules which carry that particular information from the nucleus to the sites of protein synthesis (ribosomes) in the cytoplasm. Further, there is the requirement of the process by which genetic information stored in the sequences of nucleotides in m-RNAs is used to specify the sequences of amino acids in the polypeptide gene products. This process known as translation takes place in the cytoplasm on complex workbenches called as ribosomes. With exception of water, proteins are by far the most prevalent component of living organisms in terms of total mass.

Proteins (= enzymes = genes) are composed of polypeptides and every polypeptide is encoded by a gene. Each polypeptide has a long sequence of amino acids linked together by covalent bonds. There are 20 different amino acids (glycine, alanine, valine, leucine, isoleucine, proline, phenylalanine, methionine, tryptophan, cysteine, serine, threonine, tyrosine, asparagine, glutamine, aspartic acid, glutamic acid, lysine, arginine, and histidine) present in most proteins. All amino acids except proline contain a free amino group (NH₂) and a free carboxyl group (COOH) as illustrated below:

Abstract

Pigeonpea (Cajanus cajan) is an important pulse crop of India and its production is greatly affected by wilt disease. Pigeonpea wilt is a very destructive soil borne disease caused by Fusarium udum. In the experiments, ten treatments were applied viz.; Neem leaf extracts (T₁), Garlic extracts (T₂), Tulsi leaf extracts (T₃), bio-agents Trichoderma viride (T₄), Pseudomonas fluorescens (T₅), Polymer coating (polycot) @ 4 ml diluted in 5 ml of water per kg of seed (T₆), Polymer coaating + Trichoderma viride @ 6.0 g per kg seed (T₇), Polymer + Pseudomonas fluorescens @ 6.0 g per kg seed (T₈), Polymer coating (polycot) 4 ml diluted in 5 ml of water per kg seed + Vitavax power @ 3g per kg seed (T₉) and T₁₀ served as untreated. The observations were recorded six times at 10 days intervals and started from 40 days. These polymer alone @ 4.0ml per kg and in combination with bioagents and fungicides were applied to seed were tested against Fusarium udum. The highest per cent disease control and per cent wilt disease incidence were recorded 96.09 to 64.09 and 2.74 to 33.32, respectively in T₉ (Polymer + Vitavax power @ 3g per kg seed) at 10 days intervals followed by T₈ (Polymer + P. fluorescens) gave 94.46 to 53.06 per cent inhibition, T₇ (92.39 to 52.74) and T₆ (90.97 to 49.73) however, the lowest per cent disease control was noticed as 76.19 to 40.13 per cent in T₁ (Neem leaves extract) amongst all treatments except untreated.

Abstract

Pigeon pea is an important pulse crop of India and its production is greatly affected by wilt disease. Pigeon pea wilt is a very destructive soil borne disease caused by Fusarium udum. In present research work plant extracts (Garlic, Neem, Tulsi), bio-agents (Trichoderma viride and Pseudomonas fluorescens) and fungicides (Vitavax, Bavistin and Thiram + Carbendazim) were tested against Fusarium udum. Among them fungicides were found most effective in inhibiting mycelial growth of Fusarium udum recorded 100% inhibition followed by garlic bulb extract (52.12 to 56.33%). Among bioagents, Pseudomonas fluorescens inhibit the growth up to (46.00 to 51.79%) followed by T. viride (44.32 to 48.79%) amongst all treatments except untreated.

Keywords: Pigeon pea, Fusarium udum, bio-agent, fungicide

Pigeon pea (Cajanus cajan L. Millsp.) is one of the major pulse crops grown in the tropics and subtropics belonging to family Leguminaceae. It has wide adaptability and low input requirements mostly grown in kharif season.

Abstract

Lentil is an important pulse crop and play very important role in the supply of the protein to under nourished vegetarian population of the country. Fusarium wilt of lentil caused by Fusarium oxysporum f. sp. lentis is one of the wide spread and destructive diseases in India under rice-based cropping system. Use of synthetic fungicides has led to the emergence of several problems like environment pollution, residual effect in grains and killing of non-target organism(s). Hence, for minimizing the losses caused by Fusarium wilt, four plant extracts such as Garlic, Neem, Eucalyptus, Tulsi and three antagonistic bio-agents viz. Trichoderma viride, Trichoderma harzianum and Pseudomonas fluorescence were evaluated in vitro. The results clearly showed that all plant extracts were more or less inhibitory to mycelial growth of Fusarium oxysporum f. sp. lentis. The effectiveness of extracts increased with increase of their concentration and maximum growth inhibition was obtained in Eucalyptus followed by Garlic and Tulsi. While minimum per cent inhibition was recorded in Neem. Among bio-agents, T. viride showed maximum growth inhibition of Fusarium oxysporum f. sp. lentis followed by T. harzianum at both 4 and 7 days incubation period.

Abstract

Potato (Solanum tuberosum L.), an important cash crop of India, is prone to many diseases and amongest these, late blight [Phytophthora infestans (Mont) de-Bary] is one of the highly destructive diseases and a major constraint in the profitable cultivation of potato. After realizing the significance of controlling the devastating disease for the sustainability in potato production and thus ensuring more profitability, the present investigation has been conducted with an objective to select the most effective fungicides and botanicals for the management of the disease. The present study was carried out by KVK, Saharsa during rabi season for consecutive two years (2015-16 and 2016-17) as On-Farm Trial mode at farmers fields of an adopted village of Saharsa district in Bihar. In each trial, there were four treatments including one control i.e. farmers’practice. The study concludes that the best treatment option to combat late blight disease is Seed treatment with Trichoderma viride @ 5g per kg of seed and spray of Ridomil @ 2g per litre of water starting from 30 DAP alternating with Dimethomorph 1g + ridomil 2g per litre of water at 10 days intervals. The results of economic analysis reveal that the net return as well as benefit cost ratio was also highest in Seed treatment with Trichoderma viride @ 5g per kg of seed and spray of Ridomil @ 2g per litre of water starting from 30 DAP alternating with Dimethomorph 1g + ridomil 2g per litre of water at 10 days intervals.

Abstract

India ranks first among world’s mango producing countries accounting for about 50 % of the world’s total mango production. In Bihar it is the most important fruit crop as well as occupies a large area affecting socio economic conditions of the region. The crop suffers from over 140 diseases all over the world. From young seedlings to mature trees and fruits in their all stages from start to storage may suffer from a number of biotic and abiotic stresses. All parts of the plant namely, trunk, branch, twigs, leaf, petiole, flower and fruits are prone to attack by a number of pathogens The changes in climatic patterns and shifting towards commercial cultivation of this crop has seen the emergence of some diseases which can cause huge losses to the production of mango over the years. One such problem, decline in mango is reported to be a complex problem involving multitude of factors. Decline disorders are recognized in virtually all mango-producing regions of the world. In most cases, the disease has been characterized by leaf drooping and drying; bark splitting, gum secretion from branches and main trunk, bud necrosis, dieback, vascular discoloration and death of the whole tree. The bark beetle Hypocryphalus mangiferae is closely associated with trees affected by mango sudden decline disease. Report suggests the causal agent to be Botryodiplodia theobromae, Ceratocystis manginecans, Fusarium spp, Colletotrichum sp, Pestalosiopsis maniferae. In most of the cases Botryodiplodia theobromae, Ceratocystis spp are associated with it. Although, none of the pathogens isolated could singly incite the complete decline symptoms under artificial inoculation on mango seedlings indicating towards complex etiology of the disease. Since pathogens are endophytic in nature; mangement of the pathogen after infection is difficult and relies more upon prohytalctic measures. Over all plant health, its nutritional status and abiotic conditions of flood and drought are also the pre disposing factors to decline in Mango. Effective management of decline in mango needs holistic approaches using optimum nutrition, general sanitation, routine crop protection schedule, weed management and appropriate intercropping practices.

Proteins

Proteins are of central importance in the structure and function of all living organisms. Some proteins serve as structural components while others function in communication, defense, and cell regulation. Some proteins serve as enzymes that act as biological catalysts which control the pace and nature of essentially all biochemical events. Although DNA serves as the genetic blueprint of a cell, none of the life processes would be possible without the proteins.

Electrophoresis of Proteins

Proteins can be separated and purified. Methods for separating proteins take advantage of properties such as charge, size, and solubility, which vary from one protein to the next. Because many proteins bind to other biomolecules, proteins can also be separated on the basis of their binding properties. The source of a protein is generally tissue or microbial cells. The cell must be broken open and the protein must be released into a solution called a crude extract. If necessary, differential centrifugation can be used to prepare subcellular fractions or to isolate organelles. Once the extract or organelle preparation is ready, a variety of methods are available for separation of proteins. Ion-exchange chromatography can be used to separate proteins with different charges (similar to the way amino acids are separated). Other chromatographic methods take advantage of differences in size, binding affinity, and solubility. Nonchromatographic methods include the selective precipitation of proteins with salt, acid, or high temperatures. In addition to chromatography, another important set of methods is available for the separation of proteins, based on the migration of charged proteins in an electric field, a process called (gel) electrophoresis. Gel electrophoresis is especially useful as an analytical method. Its advantage is that proteins can be visualized as well as separated, permitting a researcher to estimate quickly the number of proteins in a mixture or the degree of purity of a particular protein preparation. Also, gel electrophoresis allows determination of crucial properties of a protein such as its isoelectric point and approximate molecular weight.

There are many different methods of extracting DNA bands from an agarose gel. Which one you choose will probably depend on the consumables you have available in your lab. Another important consideration is the yield/ purity of the DNA after extraction. Agarose contains various impurities which may inhibit downstream reactions if not efficiently removed from the DNA. We used to give the generic term ‘hoonose’ to the unspecified carbohydrates that co-purified along with the DNA and inhibited enzyme reactions. Modern spin-column kits are very good at removing impurities, old-fashioned ‘kitchen sink’ methods are less good.

Cutting Out the DNA Band

Most of the methods require you to cut out the band. You must visualise the band, in an ethidium bromide stained gel, in a dark-room on a UV light- box (a trans-illuminator). UV is dangerous, wear gloves, long-sleeves and face protection. Never look at UV with unprotected eyes. If possible, set the trans-illuminator to long-wavelegth UV (or low-power) and minimise the amount of time the DNA is exposed. This is because the UV mutagenises the DNA at a measurable rate. Use a scalpel blade to cut around the band of interest. Switch off the transilluminator, switch on the white light and carefully remove the band from the gel and place it on the glass. It is good to trim off as much empty agarose as possible so go back to UV illumination briefly to do this. Place the excised band in a 1.5mL microfuge tube.

Restriction Enzymes

Restriction enzymes are enzymes isolated from bacteria that recognize specific sequences in DNA and then cut the DNA to produce fragments, called restriction fragments. Restriction enzymes play a very important role in the construction of recombinant DNA molecules, as is done in gene cloning experiments. Another application of restriction enzymes is to map the locations of restriction sites in DNA.

Restriction endonucleases, often called restriction enzymes, cut DNA within the molecule by hydrolyzing the phosphodiester bonds between the nucleotides. Restriction enzymes were discovered in bacteria and there are now more than 1200 known restriction enzyme types. These enzymes are named using a simple system. EcoRI, for example, was isolated from E. coli and was the first enzyme isolated from a particular strain, hence the designation of I. HaeIII was isolated from Haemophilus aegyptius. HindIII was isolated from Haemophilus influenzae, and was the third enzyme discovered in a particular strain.

Usually, restriction enzymes only cut the DNA at or near a very specific nucleotide sequence known as a recognition site. This “restrictive” nature of these enzymes allows molecular biologists to pin-point exactly where the DNA is to be cut. In many cases, the recognition site of a restriction enzyme consists of a palindromic sequence where the order of the bases is read the same on each side of the helix. The two sides of the helix are antiparallel and the recognition sequence reads from 5’ to 3’ on either side of the helix. For example the recognition site for EcoRI is as follows;

Introduction

The AFLP amplified fragment polymorphism also known as selective restriction fragment amplification (SRFA) technique is used to visualize hundreds of amplified DNA restriction fragments simultaneously. The AFLP band patterns, or fingerprints, can be used for many purposes, such as monitoring the identity of an isolate or the degree of similarity among isolates. Polymorphisms in band patterns map to specific loci, allowing the individuals to be genotyped or differentiated based on the alleles they carry. produces highly complex DNA profiles by arbitrary amplification of restriction fragments ligated to double-stranded adaptors with hemi-specific primers harboring adaptor-complementary 5' termini.The technique has been widely used in the construction of genetic maps containing high densities of DNA marker loci.

The AFLP protocol amplifies restriction fragments obtained by endonuclease digestion of target DNA using “universal” AFLP primers complementary to the restriction site and adapter sequence. However, not all restriction fragments are amplified because AFLP primers also contain selective nucleotides at the 3' termini that extend into the amplified restriction fragments. These arbitrary terminal sequences result in the amplification of only a small subset of possible restriction fragments. The number of amplified fragments can therefore be “tailored” by extending the number of arbitrary nucleotides added to the primer termini. Alternatively, the use of endonuclease combinations that vary in their restriction frequency can also be used to tune the number of amplicons. Generally, the abundant restriction fragments produced from complex genomes require of AFLP primers with longer selective regions. Conversely, analysis of small genomes require of only few arbitrary nucleotides added at the primer 3' termini. The resulting AFLP fingerprints are usually a rich source of DNA polymorphisms that can be used in mapping and general fingerprinting endeavors.

Introduction

Southern blotting was named after Edward M. Southern who developed this procedure at Edinburgh University in the 1970s. To oversimplify, DNA molecules are transferred from an agarose gel onto a membrane. Southern blotting is designed to locate a particular sequence of DNA within a complex mixture. For example, Southern Blotting could be used to locate a particular gene within an entire genome. The amount of DNA needed for this technique is dependent on the size and specific activity of the probe. Short probes tend to be more specific. Under optimal conditions, you can expect to detect 0.1 pg of the DNA for which you are probing.

The biological diversity of each country is a valuable and vulnerable natural resource. Sampling, identifying, and studying biological specimens are among the first steps toward protecting and benefiting from biodiversity. Knowledge about biodiversity and the ability to identify organisms that comes with it are global public goods. That is, this knowledge can create benefits for all countries - benefits that no one country can create by itself.

DNA Barcoding: Documenting Biodiversity with a Gene Sequence

“DNA barcoding” is an exciting new tool for taxonomic research. The DNA barcode is a very short, standardized DNA sequence in a well-known gene. It provides a way to identify the species to which a plant, animal or fungus belongs. The Consortium for the Barcode of Life (CBOL) is promoting international partnerships that will enable people in all countries to better understand and protect their biodiversity.

DNA barcoding is a taxonomic method that uses a short genetic marker in an organism’s mitochondrial DNA to identify it as belonging to a particular species. It is based on a relatively simple concept: most eukaryote cells contain mitochondria and mitochondrial DNA (mtDNA) has a relatively fast mutation rate, which results in significant variance in mtDNA sequences between species and, in principle, a comparatively small variance within species.

NTSYSpc 2.0 software is used for various types of analysis including calculation of similarity index values and construction of dendrogram. Construction of dendrogram using gel data in the form of bands. This software accepts zero-one data.

Botany

Several vernacular names of kewda are reported in different languages all over the world ; viz.

Keora, Ketgi, Keura, Gagandhul in Hindi; Keya, Ketaki, Kea, Ketkikea in Bengali; Kiya, Kia in Odia; Kewoda in Gujrati; Ato, Keto, Covasso in Konkani; Keoda, Keora in Marathi; Talemara in Kannada; Gedaji, Gedangimogali, Gojjangi, Ketaki, Mugali, Mogali in Telugu; Kaidai, Talhai, Thasai, Thazh, Kechiya, Kedagi, Kedagai, Muchali in Tamil; Kaita, Ketaki, Palliyambu in Malayalam; Gandhapuspa, Dalapushpa, Shivadvishta, Ketaki, Suchika pushpa in Sanskrit; Leram in Nicoberese; Mudukeyiya, wetakey in Sinhalese; Keora in Urdu; Gulkiri, Kader, Kadi in Persian; Satthapu, Tsatthapu in Burmese; Nalu in Nepalese; Togenashiadan in Japanese; Kadar, Kadhi, Kazi in Arabic Kaide, Kedige, Ketaki, Gedege, Mundige in Canarese; Kedgi in Deccan; Vaquois odorant in French and Schrauben palme in German. (Kirtikar and Basu, 1935; Randhawa and Mukhopadhyay, 1986; Kapoor, 1990).

Soil

Soil has a pronounceed effect on the plant growth and productivity in kewda. Well drained sandy-loam soil with adequate supply of moisture is best suited for its vigorous growth and flower production. Thickly distributed profitableKewda plantations with normal flowering are found in the lateritic belts with deposits of silty loam soil and adequate moisture supply. In heavy clay soil with inadequate moisture supply, the plants grow vegetatively with poor flowering. At places close to the Bay of Bengal like Rangiagarh, Kujang, Paradeep of Jagatsinghpur district, where a silt-loam soil deposit is found over the clay zone, the dense plantations of kewda with free flowering ability are noticed. But surprisingly, the female plants are more at few places close to the Paradeep port, which may be due to seed propagation by drifting of ripe fruits from the uplands; while in Ganjam district, the farmers are used to plant the selected male plants in their field resulting in high flower production.

The tentative age of the natural plantations is estimated from the rates of leaf production, stem and branch growth (5-50 cm / year) and development of branching pattern (primary and secondary) in conjuction with the interactions made with the local farmers of kewda (Fig. 9). The plants of different age groups (1 to 5 years) are observed for growth characters and flower production at Tulu of Ganjam and Konark of Puri districts under farmers’ field condition and it is observed that the initiation of flowers started at 5 years of age and the rate of flower production was 1.7 to 2.2 per plant (Table 9).

I. General information

1. Lalbagh garden is located at Bangalore
2. Founder of Lalbagh garden is Hyder Ali and his son Tipu Sultan
3. Total area of Lalbagh garden is 50 hectares and developed during 1760
4. Brindavan garden is located at Mysore
5. Government botanic garden, Ooty was established during 1848
6. Total area of Ooty botanic garden is 20 hectares

I. General information

1. Bonsai is defined as Japanese art of growing trees & shrubs by extreme dwarfing in a shallow container
2. Bonsai, the name is derived from two words, Bon & Sai
3. The meaning for the word ‘Bon’ is tray or shallow container
4. The meaning for the ‘Sai’ is to grow
5. Origin of Bonsai is china
6. In Mamie bonsai, plant height is 2-6 inches
7. In small bonsai, plant height is 6-12 inches
8. In medium bonsai, plant height is 12-24 inches

Importance of Rainfed Farming

In India, rain dependent areas are vast and they have a great contribution to make in agricultural production, with just 1/40th of the world land. Of the 141 M ha of net sown area in the country, 80 M ha is rainfed. Rainfed agriculture contributes 40% of food grain production and supports 2/3rds of the livestock population. Despite considerable progress in irrigation development over the five year plans, 85% of coarse cereals, 83% in pulses, 42% in rice, 70% in oilseeds and 65% in cotton are still cultivated as rainfed. A large portion of industrially important crops such as cotton, groundnut and castor are cultivated under dry land conditions and has a great contribution to make to the production of food, fibre, fuel and furniture timber etc. Though, impressive gains were noted in some of the rainfed crops in recent times, the gap between attainable and farmers’ yields still remain high which is a major cause of concern. Small and marginal farmers who are the backbone of rainfed farming are resource poor and risk averse. Moreover, both public and private investments in technology adoption and infrastructure have been quite low in rainfed agriculture resulting in a vicious circle of low yields-low net returns-low investments in improved technologies.

With several resource management problems emerging in irrigated regions, rainfed agriculture offers scope to contribute to the growing food needs of future particularly of pulses and edible oils. The high yield gaps between attainable yields realized by progressive farmers using improved technologies and those actually realized by the farmers at large in any given region offer scope for enhancing overall productivity of rainfed crops anywhere between 50 to 70% in the near term with the adoption of the available technologies, provided resource and institutional constraints in delivering the technology and inputs are addressed timely and adequately. With the promised break-through in yields through genetic manipulation and large scale adoption of water saving technologies through conservation agriculture, the yield gains can be further enhanced in the medium to long term.

The 80 million hectares of rainfed farming area is not uniform for resource base, opportunities and constraints. There are areas receiving high rainfall and fertile deep soils where crop yields can be enhanced significantly by double cropping combined with supplemental irrigation with water harvesting. For the relatively lower rainfall regions, the overall system productivity needs to be enhanced by integrating crops, trees and livestock. This agro-eco region based differential approach is the key for realizing the full potential of rainfed agriculture besides addressing the dimension of regional equity.

Management of watershed in India

It involves management of water, land, energy and greenery, integrating all the relevant scientific approaches appropriate to socio-economic background for a pragmatic development of a watershed. In practice, it means allowing load free rainfall run off from the watershed. Clear outflow imply management of effective soil and water conservation and generating a lush green carpet in whole of the area. In other worlds, it is greening of a watershed through proper management of land, water and energy sources. The comprehensive development of watershed seems to make productive use of all its natural resources and also protect them is termed as watershed management.

The Banave terraces in Indonesia and those in Nepal, Mediterranean are examples of integration of human elements into a system of land management, which is an early achievement in watershed management. Watershed management is not merely anti-erosional and anti-run off approach but also a comprehensive integrated approach of land and water resources management. The approach is preventive, progressive, corrective as well as curative. Here wasted land resources could be fruit fully harvested into a productive face for rural development.

Integrated watershed management programme (IWMP)

The main objectives of the IWMP are to restore the ecological balance by harnessing, conserving and developing degraded natural resources such as soil, vegetative cover and water. The outcomes are prevention of soil run-off, regeneration of natural vegetation, rain water harvesting and recharging of the ground water table. This enables multi-cropping and the introduction of diverse agro-based activities, which help to provide sustainable livelihoods to the people residing in the watershed area. In addition, there is a Scheme of Technology Development, Extension and Training (TDET) is also being implemented to promote development of cost effective and proven technologies to support watershed management.

Till 1.4.2008, Department implemented 3 watershed programmes viz. Integrated Wastelands Development Programme, Drought Prone Areas Programme, Desert Development Programme. Since then, they have been brought under a comprehensive programme named Integrated Watershed Management Programme (IWMP) to be implemented under Common Guidelines on Watershed Development, 2008.

Introduction

We are blessed with solar energy in abundance at no cost. The solar radiation incident on the surface of the earth can be conveniently utilized for the benefit of human society. Solar energy can be used as thermal energy for water heating, cooking, drying, distillation, space heating, cooling and power generation or it can be converted to electricity through photovoltaic cells, commonly known as solar cells. One of the popular devices that harness the solar energy is solar hot water system (SHWS). Flat plate collectors are used for low temperature applications (below 100^oC) while concentrators are preferred for higher temperatures. The most efficient application of flat plate collector is for getting hot water. Hot water in winter is an essential requirement for domestic uses such as bathing, cleaning of utensils and washing of clothes. In rural areas hot water is also required for softening of animal feed. Generally it is obtained by using firewood and cow dung cake in rural areas or using kerosene, liquid petroleum gas, coal or electricity in urban areas. Therefore, the use of solar water heaters will conserve lot of commercial and non-commercial fuels which are being wasted in merely getting hot water. A solar water heating system (SWHS) is made of several important elements: one or more solar collectors, a pump, a heat exchanger, a storage tank (or multiple tanks) and a back-up storage tank. The Solar heating system can be classified as passive or active. For water heating purposes, the general practice is to use flat plate solar energy collectors (FPC). The evacuated tube collectors (ETC) and evacuated tube heat pipe collectors (ETHP) are more efficient, though, the initial cost is comparatively higher. There are three type of water heaters extensively studied by various workers viz. natural circulation, collector-cum-storage and forced circulation in all over the world.

Introduction

A solar collector, the special energy exchanger, converts solar irradiation energy either to the thermal energy of the working fluid in solar thermal applications, or to the electric energy directly in Photovoltaic (PV) applications. For solar thermal applications, solar irradiation is absorbed by a solar collector as heat which is then transferred to its working fluid (air, water or oil). The heat carried by the working fluid can be used to either provide domestic hot water/heating, or to charge a thermal energy storage tank from which the heat can be drawn for use later (at night or cloudy days). Solar collectors are usually classified into two categories according to concentration ratios: non-concentrating collectors and concentrating collectors. A non-concentrating collector has the same intercepting area as its absorbing area, whilst a sun-tracking concentrating solar collector usually has concave reflecting surfaces to intercept and focus the solar irradiation to a much smaller receiving area, resulting in an increased heat flux so that the thermodynamic cycle can achieve higher Carnot efficiency when working under higher temperatures.

Introduction

Water is the primary source of life for mankind and one of the most basic necessities for crop production. The demand for water to irrigate the crops is increasing. For sustainable production from agricultural farms, irrigating the crops at right stages is highly important. Even in rainfed situation, lifesaving irrigation during long dry spell has also been found beneficial for crop survival and to obtain the targeted yield. Considering the depletion of groundwater below the critical zone in most part of the country, energy intensive pumping for irrigation is not a viable option. Therefore utilization of available runoff water through surface storage systems followed by pumping may be a potential solution to achieve the set goal of ‘crop per drop’ mission. In this connection, micro-irrigation system including drippers and sprinklers is of great importance. However, ensured power supply is essential to operate the micro-irrigation system even in remote areas. Reliable solar photovoltaic (PV) pumps are now emerging in the market and are rapidly becoming more attractive than the traditional power sources. These technologies, powered by renewable energy sources, are especially useful in remote locations where a steady fuel supply or electricity supply is problematic. About 16 million electric pumps and 7 million diesel pumps are in operations in the country for irrigation purpose; however they are highly energy intensive. Moreover, diesel operated and electrified pumps directly or indirectly emit large amount of CO₂ gas in atmosphere and hence are not environment friendly. To meet the energy demand for irrigation, solar PV pumps have been introduced under the off-grid power generation category of National Solar Mission (NSM) with a target of 1000 MW by the end of phase II (2013-2017). The target has been revised in 2015 to a total grid connected solar power generation of 1,00,000 MW comprising 40,000 MW roof top generation and 60,000 MW grid connected solar power plants (Resolution of MNRE, Govt of India, No. 30/80/2014-15/ NSM dated 1^st July 2015).

PV clad structures and hybrid devices for rural and agricultural applications have been developed after considering different design aspects, climatic parameters, solar radiation availability on different planes, heat transfer coefficients, performance of PV in arid region and inter phasing of different components while keeping in view, practicality, application and ease of operation. Performance of the developed systems was studied, mathematical model developed and energy savings worked out for techno-economic considerations. The chronology and details of the developed PV structures and hybrid devices are as follows:

Green structure for environmental control

First of all a Quonset type environment control structure having a length of 5.3 m and width 4 m was fabricated with angle iron and iron rods and it was covered by agro-net (75%) having surface area of about 55 m². The structure having a volume of 33 m³ was fixed with long side along east west direction and had provisions for incorporation of misting unit on west side and a door on east.