eBook Chapters

Particulate soil organic matter (POM) is one of the important soil organic matter (SOM) pools and matches the characteristics of a slow, decomposable or stabilized SOM pool. The POM fraction is considered as one of the indicators to changes in management and thus has been used in soil quality assessment studies.

The animal bodycan be imagined as a machine, which is gettinginput of desired or available feed given by the farmer and this animal body after processing through various metabolic activities, output of product is given off. Feed is composed of organic nutrients-carbohydrate, fat and protein and after reaching in the animal body, used for constructive work, for example synthesis of body tissues and other associated work. Later, milk or egg is produced as an output. Now putting the same perspective in terms of energy, that is, these organic nutrients of the feed contain chemical energy and after reaching in the animal body, used as mechanical energyin muscles or heat energyin metabolism. The energy in the body would be utilized for the synthesis of body tissues or other productive output, for example, draft work by bullocks. Therefore, energy is primarily required for the maintenance of the body and then, for the productive purposes :

• Growth for all the farm animals

• Milk from cow, buffalo, sheep, goat • Eggs from poultry, duck, turkey

• Wool from sheep

• Meatfromfatteninganimals under the law, for example– mutton, chevon, pork, chicken.

Abstract

The paper deals with the roles played by the NGO’s in the relief and rescue phase of Dec, 2004 tsunami and the effective role played by NCRC -NGO Coordination and Research Centre - in the rehabilitation phase along Tamil Nadu coast by creating successful partnership with government and the public.

Keywords: The Role of NGO’s, Tsunami 2004, Relief and Rehabilitation, NGO Coordination Research Centre.

INTRODUCTION

The scale of the tsunami disaster was unprecedented and the response too was out of the ordinary. Tamil Nadu was the worst affected state in India with Nagapattinam district being the most affected with over 6000 lives lost, about 40,000 houses damaged or destroyed and 1.96 lakh people affected. Relief poured in from both government and non-governmental organizations, including the religious organizations, and the first few days witnessed heartwarming outpourings of help and support.

There were about 400 NGOs and an equal number of volunteers to help in the relief operations which included food, clothing, household utensils and bedding. With such a large scale of external support, mainly from organizations and people from outside Nagapattinam, it was not surprising that chaos and confusion marked the first few days of relief operations still. Based on the experience of some professionals experienced in disaster management, a coordination platform was created called the NGO Coordination Cell. This platform was managed by two NGOs, who had long standing field presence in Nagapattinam, viz., South Indian Federation of Fishermen Societies and SNEHA, with the mandate and support of the District Administration. The main role of this platform was to meet the field based requirements of all the relief camps with the resources and materials available with the NGOs and the Govt. The paper briefly deals with challenges faced by the NGO’s in relief and Rehabilitation of the historical Dec 2004, Tsunami.

Introduction

Goats provide multiple products like chevon, milk, skin, fibre, manure and transport. Pashmina occupies a prime position among animal fibres for its firmness, warmth, durability, lightness, softness and ability to absorb dyes and moisture compared to mohair and/or wool for being free from modulation and crimps. Pashmina is highly valued fibre for manufacturing quality apparels. It has recorded its name in the Guinness Book of World Records for being costliest cloth in the world after trade ban of most precious natural fibre Shahtoosh (King of fibre) of small Tibetan Antelope known as Chiru. In India, two recognized pashmina breeds are Changthangi and Chegu. Changthangi is native to high altitude areas (3700 to 4500m) in Ladakh region of Jammu and Kashmir reared by a pastoralist nomads Changpas whose population is 1,96,000 (LADHC, 2006). The Chegu breed is distributed in cold-arid trans-Himalayan mountain ranges from Himachal Pradesh to Uttaranchal at an altitude of more than 3000 m (Thakur et al., 2006).

Passion fruit, (Passiflora edulis Sims) belongs to the family Passiflora. Within this species, there are two distinct forms, the standard purple, and the yellow, distinguished as P. edulis f. flavicarpa Deg., and differing not only in color but in certain other features. The purple passionfruit is native of southern Brazil. The yellow form was unknown in India until just a few decades ago when it was introduced from Ceylon and proved well adapted to low elevations around Tamil Nadu and Kerala.

Uses

Passionfruit juice can be boiled down to a sirup which is used in making sauce, gelatin desserts, candy, ice cream, sherbet, cake icing, cake filling, meringue or chiffon pie, cold fruit soup, or in cocktails. The seeded pulp is made into jelly or is combined with pineapple or tomato in making jam.

The purple passion fruit (Passiflora edulis) is a native of the rainforest margins in the Amazon region of Brazil. Passion fruit acquired its name from Spanish missionaries who thought that parts of the plant’s flower resembled different religious symbols such as the crown of thorns. Passion fruit grows on a vine in tropical regions. It has a tough, smooth, waxy rind that can be either yellow or purple. The flavour is like a cross between melon and guava. Passion fruits get sweeter as they shrivel. The fruit will quickly turn from green to deep purple (or yellow) when ripe and then fall to the ground within a few days. They can either be picked when they change colour or gathered from the ground each day.

Genus : Passiflora 
Species : edulis Sims.
Family : Passifloraceae
Chromosome No. : 2n = 18

The passion fruit (Passiflora edulis) is another fascinating tropical fruit besides having both dessert and processing qualities, the crop also has a big multi coloured very attractive flower and fruit with district taste  and flavour. Passion fruit is very popular in number of tropical and subtropical countries. Despite having variability at the species level the commercial development has not progressed as desired which is evident from the fact that the available commercial types are highly susceptible to diseases, lack of adaptation to soil and climate extremes, high establishment costs growing management problems  harvesting and market costs have forced the grower to focus on other remunerative crops. Passion fruit is said to be good source of minerals especially calcium, phosphorus and iron, vitamin A, niacin and riboflavin.

Introduction

The thermal performance of a building refers to the process of modeling the energy transfer between a building and its surroundings. For a conditioned building, it estimates the heating and cooling load and hence, the sizing and selection of HVAC equipment can be correctly made. For a non-conditioned building, it calculates temperature variation inside the building over a specified time and helps one to estimate the duration of uncomfortable periods. These quantifications enable one to determine the effectiveness of the design of a building and help in evolving improved designs for realizing energy efficient buildings with comfortable indoor conditions. The lack of proper quantification is one of the reasons why passive solar architecture is not popular among architects. Clients would like to know how much energy might be saved, or the temperature reduced to justify any additional expense or design change. Architects too need to know the relative performance of buildings to choose a suitable alternative. Thus, knowledge of the methods of estimating the performance of buildings is essential to the design of passive solar buildings.

The modern or climate controlled greenhouse requires massive inputs of energy and cost of claddings to grow crops out of season making them high cost structures. However, growing of certain horticulture crops and their nurseries out of season is happening in a sustainable way, using the heat from the sun and soil too. These are called passive solar greenhouses designed to retain as much warmth as possible. This concept has revolutionized vegetable production in Ladakh, high altitudes and other parts of the country in winter months.

The solar greenhouse is especially successful in China and are contributing mainly in vegetable production. Solar passive greenhouses are designed in different shape size using different local and other materials keeping in view the local climate and terrain. The poly houses mentioned earlier such as, low cost polyhoses, Ladakhi poly house, solar trench, polyench are passive solar green houses. Being the opposite of the climate controlled greenhouse, the passive solar greenhouse is heated all-year round with solar energy alone, even when the outdoor temperature drops below freezing point. The indoor temperature of the structure can be higher than the outdoor temperature. The temperature can be around 25°C (45°F).

Such greenhouses have been experimented by Defence Research and Development Organization through its establishment FRL (Field Research Laboratory) now DIHAR (Defence Institute of High Altitude Research), Leh/ Ladakh since 1962 during November to the end of March, the period during which the outside temperature drops there below freezing. The average temperature in the coldest month is between -15°C and -18°C. Over the several decades of research different and effective designs of such greenhouses have been standardized which are suitable to produce fresh vegetables like most of the leafy vegetables, tomato, cole crops and potato at sub zero temperature.

18.1. Basic for Government Intervention in the Economy

One of the most powerful arguments to justify government intervention in the economy in the economy is the so-called concept of market failure. In a typical free enterprise system where demand and supply forces operate, the efficiency which results only relates to economic welfare. The social cost implications of economic activities tend to be ignored. Governments therefore intervene in the economy with the social welfare objective in mind. One popular way by which governments have intervened in the economy is through ownership of particular industries or outright nationalization of some private enterprises. The advantages usually claimed for such an action are as follows:

Introduction

The ancient agriculture as an each class of advice has been well connected into several subcategories. As such, the advice under centennial sub-category has been divided to a few references, in adjustment with proper specification not to access only the aggregate of the publication. However, the information on past day agriculture to attending for data has been collected from the adapted references. There are several pictures assuming seeds of cereals and legumes and those of a collection of agricultural tools and implements begin in archaeological excavation and office texts. These are mentioned to advance how accurate to accept in aggregate of every fragment of advice and verify it from added sources more than one. The painstaking and thorough going work have revealed the state of agriculture during the period under study and its gradual development through the ages. The recorded findings are no doubt those have not been comparable with present-day agriculture. The awareness of the people engaged in agriculture regarding the types of food-crops to be grown, the animals to be domesticated and reared for agricultural operations as well as sources of food and nutrition, the design and preparation of tools and implements for agricultural operations and machineries for food processing unfolds gradually with experience gathered in course of time. The agriculture in past period wherein the population was predominantly pastoral and agricultural such great strides were noticeable in the pursuit of agricultural sciences with a sound traditional and scientific practice. Therefore, the recognizable endeavor throughout the period gives sufficient reasons to be proud of cultural continuity towards agricultural heritage.

Introduction

Military personnel’s are deployed for operation in adverse climatic conditions like desert, cold (arctic) and high altitude regions. Stressful and challenging living conditions have affected the outcome of many battles, campaigns and wars. Acclimatization to the environmental condition is a very essential stage of deployment. The time for acclimatization is restricted/limited for the effective operation towards the purpose of deployment. The performance of the military personnel in various deployed regions depends on the nutrition provided by the food consumed. The operational rations are designed to provide the essential nutrition to enhance their performance during training and/or operational situations.

Nutrition requirement of military personnel is different from that of the civilians. The nutrition requirement also varies with the kind (sedentary or continuous work) and region (plain, desert or high altitude) of deployment. The environmental stress caused by extreme heat, cold, etc. also influences the nutrient requirement/ intake. The insufficient dietary nutrient intake affects the immune function, pace of recovery from illness and injury and also the physical performance (Tharion et al., 2005).

The operational ration is also designed in such a way that it provides to the military personnel the required nutrition from the build in nutrition reserves during certain operational situations. Considering the vital criteria for nutritional requirement, the menu for the military personnel is designed. The chapter discusses the past, present and future of the army operational ration (AOR) in various countries of the world and the influence of advances in food processing methods in AOR menu.

Pasteurella and Mannheimia species are gram negative small coccobacilli under family Pasteurellaceae. Trevisan (1887) coined the generic name Pasteurella for the first time and it was accepted worldwide. Lignieres (1900) proposed the specific name for each organism according to the species of animal host: Pasteurella aviseptica for fowls; P. suiseptica for pigs; P. boviseptica for bovines; P. oviseptica for ovines and P. leptiseptica for rabbits. Finally, Rosenbuch and Merchant (1939) proposed a single species Pasteurella multocida and it is in use till date. 

      Mannheimia haemolytica was earlier known as Pasteurella haemolytica, but because of variations in cultural, pathological and 16S rRNA sequence, it is placed in separate genus.

Properties of genus

Morphology : P. multocida is a non motile, non spore-forming short rod or coccobacillus, 0.2-0.4 by 0.6-2.5 µm in size. Repeated laboratory subcultures or cultures grown under unfavourable conditions tend to be pleomorphic and longer rods or filamentous forms appear. In tissues, exudates and recently isolated cultures, the organism shows the typical coccobacillary forms. It is a gram-negative organism and, in fresh cultures and animal tissues, gives typical bipolar staining (Fig.1), particularly with Leishman or methylene blue stain.

1. Introduction

Milk is a source of abundant nutrition has been a vital part of human civilization since prehistoric times. However, because of its perishable nature, it requires immediate processing to improve the shelf life and safe consumption .With the advancement of processing techniques in dairy and food processing, there is a widespread option being utilized to improve the milk shelf life byeither thermal technologies (pasteurization, sterilization, and ultra-high temperature) or nonthermal technologies (high pressure processing, high pressure homogenization, pulse electric field and ultra sonication). Still, pasteurization and sterilization are the two foremost process is used for milk industries. Pasteurization is the thermal inactivation of microorganisms at temperatures below100°C that enhance the safety and quality of milk and milk products and extends the shelf life to an extent. 

10.1. Origin and distribution

• Native of Philippines

• Grows wild in Malaysia, Indonesia and Singapore.

• Natural habitat extends across Paruguay, Penang, East and West Indies, sub-tropical Himalayas and Deccan peninsula.

• Introduced into India by Tata Oil Mills

• Cultivated in Bangalore and coastal areas of South India, Bengal, Odisha and Assam.

10.2. Economic importance

• Oil of patchouli is called patchoulol. Oil contains benzaldehyde, eugenol and cinnamic aldehyde etc.

Leaf webber: Syngamia abruptalis :Pyralidae
 
Caterpillars feed extensively on tender foliage leaving veins alone and the growth of the plants are affected.

Leaf roller: Psara stullalis: Pyralidae

Larvae of these small moths are also leaf Webbers and rollers, and rolls the leaves and feed inside causing browning and drying of affected leaves. Inspect the crop for the pest incidence and remove the initial attacks systematically.

Technology transfer is an important commercial tool for leveraging and optimizing the value of intangible assets in the present era of globalization which has deepen the process of integration of the economic resources including the free movement of goods, merchandise, services, capital and intellectual property rights. This economic integration is facilitated by a legal framework of World Trade Organization (WTO) under various agreements including the Trade Related Aspects of Intellectual Property Rights (TRIPS). There are other International Institutions i.e., World Intellectual Property Organization (WIPO), World Customs Organizations (WCO) and United Nations Conference on Trade and Development (UNCTAD) to regulate and provide guidance for the protection and enforcement of IPRs. The present global economy is geared and triggered by knowledge and almost 80 % of the global wealth comes from knowledge based intangible assets and helps optimization of the limited global resources. Technology transfer is a tool for leveraging the value of IPRs and also for sharing knowledge around the world. Knowledge is weightless and in today’s era, knowledge is driven by Information and Communication Technology (ICT) which adds to productivity in all aspects of economic life.

The term “Technology transfer” broadly connotes transfer of knowledge from one legal entity to another legal entity within and outside the national territories of the legal owner of the Patent holder at a consideration, known as license fees or technical fees or royalty. This may happen as a part of Foreign Direct Investment (FDI) or as a part of pure technological collaboration. In other words, Transfer of Technology (TOT) and Technology Commercialization allows the transfer of the technology by a patent holder to a user for further development and exploitation of the technology into new products, processes, applications, material or services. Patent provides an exclusive right to the patentee to exclude others from using an invention without his consent and the technology transfer is the process to include the licensee as the legal user without infringing the rights of the patentee. The exclusive right granted to a patentee is the right to prevent others from making, using, selling, or distributing the patented invention without his permission. The technology transfer allows the user to use the patented technology with the consent of the patent holder.

Abstract

Patent infringement is the act of unauthorized making, using, offering for sale or selling any patented invention within the India. In case of patent infringement it is necessary for the patentee to compare the claims granted to him with the allegedly infringing product an check whether there is an infringement – whether the infringing product falls within the scope of the claims of the patent. In such a case the patentee may sue for relief in an appropriate court. The patentee may ask for permanent injunction and damages on account of the infringement. It is the crusade of the inventor asserting his rights against an infringer and the law recognizes the importance of this right; because, without such positive and assertive rights, industrial progress would be hard to come by

Abstract

Patent is a monopoly right which is granted by the Government to the applicant for the full disclosure of an ‘invention’ which is ‘new’, ‘inventive’ and ‘industrially applicable’. Thus, before filing a patent application, the inventor must be sure that the work done by him is new and inventive. Further, during the examination of the patent application, it is required to be verified that the invention claimed in the disclosure/specification is new, inventive and industrially applicable. Since the search for the ‘Novelty’ of the invention is carried worldwide, it becomes all the more important for the inventor and the examiners to search for the prior art thoroughly. Searching for the prior art (i.e. state of the art) across the globe in around millions of documents both patents and non-patent documents, is like ‘searching a needle in the haystack’. However, by using proper keywords and classification techniques, it is possible to arrive at the closest prior art available. Each patent application is classified by the Indian Patent Office and thus attributed to one or several fields of technology. The classification scheme applied is the International Patent Classification (IPC).

A Patent is a written document explaining an invention with exclusive right. It is used to protect an inventor/scientist and to prevent other from making profits without permission. It is also used as an authority paper permitting license holders to duplicate the results. A patent application requires a combination of legal documentation and technical papers. This issue makes patent writing a very different writing style.

In India, patent applications can be filed by a patent agent or an individual having some scientific and technical background to understand the invention. However, no one can understand the invention better than the inventors themselves. Document preparation requires healthy discussions between the inventor and agent. For inventors, a good understanding on patent writing style can greatly facilitate the documentation process. Before filing the patent application inventor must be sure about that the subject is eligible for patent protection, the invention has something new, the invention is not obvious and is not easily predictable from general consensus, and the invention has practical application.

Abstract

Issues regarding intellectual property rights and their protection are heralded nowadays in the scientific arena both in developed and developing countries. IPR is being given greater attention and importance due to the projected idea that it is a dependable means through which greater skills and knowledge can be utilised to serve as a reliable resource for the upliftment of the economy as well as knowledge dissemination. In context of microorganisms, India does not allow patenting of microbes whichalready exists in nature assuch but genetically modified version of the same microorganism with enhanced and improved efficacy can be patented. The deposition of microorganisms in a culture collection recognized as an international depository authority (IDA) is necessary if intellectual property rights regarding these microbes are to be claimed. An action plan for developing countries towards creating IDAs and preserving the natural gene pool has been evolved. It is likely that IDAs will transform into ‘biological resource centres’ and further into‘global common genetic resources’, with an internationally agreed legal basis for benefit sharing. This chapter is an effort to highlight the genesis of patenting and legalities of patenting microorganism in India.

I. INTRODUCTION

In a global, knowledge-based economy, Intellectual Property Rights (IPRs) are a key to the international competitiveness of both nations and firms. International competition in the traded goods increasingly contains a high degree of innovation. IPRs have thus; become a trade issue and a major component of the World Trade Organisation (WTO). Adequate IP protection at an international scale has become essential for appropriating global revenue streams to support investments in developing state of- the- art technology. Although the concept of intellectual property is very old, there appeared the need to harmonize laws to facilitate international trade and free flow of technology. This became very necessary because it was difficult to obtain sufficient protection in the other countries of the world, in view of the disparity in the laws in each country. As per World Intellectual Property Organisation (WIPO) definition, intellectual property refers to creations of the mind, inventions, literary and artistic works, symbols, names, images and designs used in commerce. Broadly, intellectual property is divided into two categories. The first category covers industrial property, which includes patents, industrial designs and trademarks, all of which have industrial applications. The other refers to copyright laws, which are applied to such things as literary, dramatic and artistic works; rights relating to performing artists, the production phonograms and rights of broadcasters in their radio and television programs.¹ Patented inventions have, in fact, pervaded every aspect of human life, from electric lighting and plastic, to ballpoint pens and microprocessors. During a time when the future of many industries seems uncertain, one industry in particular appears to be positioned for expansion and enduring success. This is the biotechnology industry, which according to some analysts will be a major driving force behind the new economy of the 21st century.2 This seemingly lofty prediction is based in large part on the immense promise offered by biotechnology. The innovations developed with biotechnological techniques promise to prolong and improve our lives and the world we live in by achieving advancements in health care, agriculture, food products and production, industrial processes and environmental preservation. Biotechnology is not a new science and it has existed in some form or the other for centuries. Biotechnology in one form or another has been part of human development since the dawn of agriculture. Human ingenuity has led to increased production and greater diversity and quality of livestock and varieties of crops. Today’s food crops and domestic animals embody the benefits of many generations of selection and breeding. However, the advent of genetics has opened exciting opportunities in this sector, because of its numerous applications, which range from improvement of human health and food production to reduction of environmental damage. These opportunities are also coupled with controversies that not only challenge the laws within which society functions, but also our ethical and religious beliefs.

1    Introduction to Patent Laws    540

2.    An Overview of the Patenting Process    541

    2.1.    Inventor’s disclosure, 542
    2.2.    Patentability search, 542
    2.3.    Patent application preparation, 542
    2.4.    Patent application amendment, 542
    2.5.    Patent application examination, 543
    2.6    Main parts of a patent, 543
    2.7.    Granting of patent, 544
    2.8.    Date and term of patent, 544
    2.9.    Provisional specification, 544
    2.10.    Complete specification, 545
    2.11.      Cost of patenting, 545

Chapter I: Preliminary

1. Short title, extent and commencement
 
    (1)    This Act may be called the Patents Act, 1970. 
    (2)    It extends to the whole of India. 
    (3)    It shall come into force on such date as the Central Government may, by notification in the Official Gazette, appoint: 
PROVIDED that different dates may be appointed for different provisions of this Act, and any reference in any such provision to the commencement of this Act shall be construed as a reference to the coming into force of that provision.

To fully harness the potential of human creativity in industrial applications, it’s essential to safeguard and organize it effectively. One of the best ways to achieve this is by obtaining a patent. The term “patent” is derived from the Latin word “patere,” meaning “to lay open” or make available for public inspection. A patent is an exclusive right granted by the government to an inventor/creator for a limited time in exchange for disclosing their invention for public use. With this right, the patent holder can prevent others from making, using, selling, or exploiting the invention for a certain period, thereby providing commercial benefits to the inventor.

Patents are among the oldest forms of intellectual property rights and are territorial in nature, offering protection only within the country where they are granted. However, through conventions and the Patent Cooperation Treaty (PCT), applicants can seek protection in multiple countries. Obtaining a patent grants the inventor a monopoly right to control the product’s production, sale, and marketing. Although the rights granted through a patent are limited to a specific country, extending protection to all contracting countries is possible through a PCT application.

This chapter provides an insight into the genotypic and phenotypic correlations between plant traits. It incorporates the study of genotypic and phenotypic path analysis and the understanding of genetic variability, all illustrated through practical examples in R, relevant to plant breeding research.

Path Analysis

Path analysis explains not only the direct impact of one character on another but also indirect effects mediated through other variables in the system. The approach is similar to the analysis of variance and is sometimes referred to as the analysis of correlation coefficients. A notable feature of path coefficients is that they are standardized partial regression coefficients, devoid of units. This standardization allows for the direct effects of different variables to be compared and ranked based on their magnitude. This approach was first applied in plant studies by Dewey and Lu in 1959, particularly to examine the factors influencing seed yield.

Path Coefficients

In the computation of path coefficients, a path diagram is translated into a series of simultaneous equations. These equations reveal the direct and indirect contributions of causal variables to the outcome. For example, in the field of plant breeding: consider the yield of forage (Y) being influenced by different variables. These could include the leaf length (X1), leaf width (X2), and number of leaves per plant (X3).

Ornithosis

Ornithosis is caused by Chlamydia and characterized by enlargement of liver and spleen, serofibrinous pericarditis, air sacculitis and enteritis. This is also known as chlamydiosis, psittacosis and is more common in parrots, pigeons and other psittacine birds.

Etiology

• Chlamydia psittaci group B

• Size 0.3 to 1.5 m

• Disease spreads from wild birds

Answer the followings
    Q.1.    What is the different stage of pathogenesis in mastitis?
    Ans.    There are three stages in pathogenesis 
These are as follows:
Invasion: here pathogens move from the exterior of teat to milk inside the teat canal.
Infection: Here pathogens multiply rapidly and invade the mammary gland.
Inflammation: In this stage clinical mastitis occurs with varying degree of clinical abnormalities of milk and udder.
    Q.2.    Of these phases, which phase is important to reduce the incidence of mastitis in control program?
    Ans.    Invasive stage is very important. The incidence of mastitis can be reduced by taking preventive measures at invasive stage by good management and good hygiene practices.
    Q.3.    What are the common abnormalities encountered in udder during mastitis?

Pathogenesis: Role of enzymes

The chain of metabolic events that bring about the disease is pathogenesis. It involves the virulence of the pathogen, susceptibility of the plant and impact of the environment. It is called disease triangle. Penetration infection, invasion, colonization and reproduction are the events that occur during pathogenesis, and lead to development of disease.

The establishment of pathogen in the host and consequent development of disease involves a chemical interaction between the host and the pathogen. The pathogen employs offensive chemical weapons to break host barriers, which the host resists with all its might. Parasitism and disease resistance run parallel and are inseparable, A biochemical ‘tug of war’ ensures between the host and the pathogen, in which one tries to outwit the other. Enzyme, toxins and growth regulators are the important chemical weapons of the pathogen. Viruses, however, because of their basic nature, do not produce any of these chemicals.

Pathogens produce these substances either in normal course of their activities (constitutively) or when, they grow on certain substrates such as their host plants (Inducible). Plant pathogenic enzymes disintegrate the structural components of host cells, breakdown inert food materials in the cell, or affect components of the protoplast directly and interfare with its functioning system. Toxins seem to act directly on protoplast component and interfare with the permeability of its membrane and with its function. Growth regulators exert a hormonal effect on the cells and either increase or decrease their ability to divide and enlarge. Polysaccharides seem to play a role only in the vascular diseases, in which they passively interfere with the translocation of water in the plants or they may also be toxic.

Pathogens are different from parasites, Parasites penetrate into the host and obtain nutrients from the host. They live inside the host without causing any other damage. They may be at times symbionts also i.e. they may be beneficial to the host. The examples for parasites are Rhizobium spp. which form nodules in leguminous plants and mycorrhizal fungi. Pathogens not only take nutrients from the host but also damage the host severely. They induce numerous symptoms of the disease and even kill the plants.

Pathogens in their life cycle enter into two distinct phases. One is biotrophic and the other is necrotrophic phage. In the biotrophic phase they invade the host cells inter and intracellularly and establish themselves in the living cells. In the second phase, they kill the cells and obtain nutrition from the dying cells. This phase is called necrotrophic phase. In case of obligate pathogens the biotrophic phase may be much longer while in case of facultative saprophytes, long biotrophic phase may be followed by necrotrophic phase. In case of facultative parasites necrotrophic phase will be much longer with short biotrophic phase. However in case of all pathogens, both the phases may exist either as a short or long spell.

In the biotrophic phase the pathogens establish themselves in the host cells. The first barrier between host plant and the attacking pathogen is the cuticle. Host cells have cell wall, structure surrounding the protoplast. Cell wall is divided into three regions: middle lamella, primary wall and secondary wall. Below the cell wall membranes are found. The membrane provides a semi permeable barrier between the cell and its external environment. The membrane consists of lipids and proteins. During the biotrophic phase, the pathogen invade the cells by degrading cuticle, middle lamella,cell walls and cell membranes, by producing a series of enzymes.After the biotrophic phase, the pathogens produce toxins which kill the cell and enter into the necrotrophic phase. Thus, enzymes, toxins, growth regulators are important tools of the pathogens for their pathogenesis.

Definition

Pathogenesis can be defined as the chain of events leading to the development of a disease. In another words it is also called disease cycle.

It tells us about

Calcification

• Calcification is abnormal deposition of calcium salts in tissue other than bone.

• Calcium is normally present in blood and deposited in bones.

• Calcium if deposited in an abnormal tissue with normal or abnormal blood calcium level is considered as pathological condition.

Pathological calcifications are

1. Metatstatic calcification

2. Dystrophic calcification

Diseases are among the greatest deterrents to the sustained production in aquaculture. White spot disease (WSD) in penaed shrimp and epizootic ulcerative syndrome (EUS) in fresh and brackish water fishes are the well known devastating diseases with serious impact in aquaculture. Aquaculture medicine which broadly encompasses prevention and management of diseases in cultured aquatic organisms becomes a vital requirement for a sustained industry.

The four K’s essential for scientific aquaculture health management are knowledge about the disease process, knowledge about the pathogen, knowledge about the host and the knowledge about the environment. Disease development process is often complicated and involves host-pathogen- environment interactions. Knowledge about the pathogen, attaching and entering the host, deriving nourishment, reproduction, transmission, overcoming host defence barriers, etc are very essential. Susceptibility of a host to a pathogen is important which depends on host species, age, size, immuno competence and stress response. Besides knowledge about how the temporal and spatial aspects of environment stress the host and favour the pathogen to cause disease is vital

Disease Development Process

There exist a delicate balance between the host, pathogen and the environment. When this delicate balance gets upset, disease can result. Aquaculture environments can stress the host, favour the pathogen and result in disease development. To appreciate the process of disease development understanding the pathogenicity mechanisms of the pathogens, disease resistance mechanism of the host and the role of the environment is essential. Furthermore, role of various pathogens, their adaptive modifications, the functional importance of the target tissue, interaction between pathogen and host at the target tissue level, pathogenicity mechanisms of pathogens, etc are necessary to gain insight into process of disease development. Only when a pathogen can establish on or in the host, proliferate, overcome the non-specific and/or specific defense barriers of the host, produce the pathogenic factors, cause cellular and tissue damage, produce significant pathological changes, impair the function of the target tissue cause clinical disease often with mortality. This process is very complicated which often get accelerated by stress and environmental factors. However, the sequence of disease development will to a large extent depend on the nature and load of the pathogen (parasite, bacteria, fungi, virus), its intensity per unit area or unit weight of the host, size of the host and environmental factors.

Tuberculosis

Tuberculosis is a chronic bacterial disease of cattle, buffaloes, sheep, goat and pigs caused by Mycobacterium sp. and characterized by presence of tubercle nodules in lungs, spleen and lymph nodes (Fig.2.1).

Etiology

• Mycobacterium tuberculosis

• M. bovis

Pathogenesis

Disease spreads through contact with infected animals or their discharges or morbid tissues. The infected animals release the organisms through sputum at coughing and contact animals get infection through droplet inhalation.Besides sputum, faeces, urine, vaginal discharges, semen, milk, lymph and wound discharges may act source of infection. It is also transmitted through contaminated instruments, utensils and beddings. After entry through inhalation or ingestion, bacilli localizes at the point of entry and produce typical tubercle in associated lymph nodes. Mostly pharyngeal and mesenteric lymph nodes are affected. From lymph nodes, infection may extend across body cavities, blood vessels and lymph vessels. The inhaled organism enter in the bronchial tree after lodging in bronchi a tissue reaction takes place. Neutrophilic infiltration is there and when neutrophils are necrosed, macrophages come to destroy the organism but they fail then many macrophages becomes elongated to form epithelioid cells, the hall mark of granulomatous inflammation. Some macrophages are joint together to form giant cells to destroy the acid fast bacilli. As a consequence of this some bacilli are phagocytosed and are destroyed. A zone of lymphocytes, macrophages, epithelioid cells, giant cells and fibrous connective tissues are formed around the central necrosed area.

Salmonellosis

Salmonellosis is caused by G-bacteria Salmonella and characterized by early chick mortality with necrosis and hemorrhage in liver, heart and spleen and enlarged bronze coloured liver with focal or diffuse necrosis, marbled spleen and/or oophoritis and salpingitis in adults (Fig.4.1).

Etiology

• Salmonella enteritidis var. Galinarum (S. Galinarum).

• G-, rod, non lactose fermenter.

• White small colonies on MLA and pink on BGA.

Developmental Anomalies

Persistent right aortic arch

This is a developmental anomaly of aorta in which the aorta develops from right arch present on right side of trachea and oesophagus. The ductus arteriosus forms a ring around trachea and oesophagus by connecting aorta and pulmonary artery. This ring causes partial obstruction of trachea and/or oesophagus.

Patent ductus arteriosus

The ductus arteriosus is a short blood vessel which connects pulmonary artery to aorta in foetal life for diversion of blood. Normally, soon after birth this duct is sealed and remains in the form of a ligamentum arteriosum. But sometimes this ductus arteriosus remains open and blood is continuously shunted between aorta and pulmonary artery, after leading to congestive heart failure, pulmonary hypertension and cyanosis due to mixing of venous and arterial blood (Fig. 3.1).

Chlamydiosis

Chlamydiosis is an infectious disease of animals caused by Chlamydia sp. and characterized by encephalitis, polyarthritis and pneumonia in calves and abortions in cows and sheep.

Etiology

• Chlamydia psittacii

Pathogenesis

Chlamydial infection spreads through inhalation of contaminated dust from infected birds. Organism multiplies in lungs and through blood it spreads to liver, spleen, kidneys, brain, joints and placenta to cause pathology.

Characteristic symptoms

Calves

• Fever, dyspnoea

• Nasal discharge, hypersalivation

• Swelling of joints

Developmental Anomalies

Congenital icthyosis

Congenital icthyosis is scaly epidermis which resembles the skin of fish and occurs due to a simple autosomal recessive homozygous gene in calves. This condition is characterized by scaly, horny, thick epidermis divided into plates by deep fissures. Microscopically, there is thick keratin layer over the epidermis (Fig.1.1).

Epitheliogenesis imperfecta

Epitheliogenesis imperfecta is a congenital defect characterized by discontinuity of epithelium on skin leaving patches without squamous epithelium mostly at feet, claws and oral mucosa. Such defect may occur in calves which succumb to infection after birth or such foetus may abort. This disease condition is inherited as an autosomal recessive trait.

Developmental Anomalies

Epitheliogenesis imperfecta of tongue

Abnormal smooth surface of tongue due to small filiform papillae. It occurs as a defect in autosomal recessive gene and occurs in Holstein-Friesian cattle. This is also known as smooth tongue.

Cleft palate

This is most common congenital abnormality that occurs due to failure of oral nasal cavity to divide leaving cleft. It may also extend towards lips producing ‘harelip’ condition.

Mega colon

There is distention of colon which abruptly terminates in rectum due to mutant gene in dogs.

Pathology of Endocrine System

Pathology of Hypothalamus

The lesions in hypothalamus may cause diabetes insipidus characterized by polydipsia and polyuria with low specific gravity of urine. It occurs due to deficiency of antidiuretic hormone vasopressin.

Etiology/ Occurrence

• Lesions in hypothalamus and/or pituitary.

• Adenoma and adenocarcinoma of pituitary.

• Necrosis of hypothalamic nuclei due to larval migration.

Ringworm

Ringworm is a fungal disease of skin affecting animals characterized by popular skin lesions in circular form discharging serus exudate.

Etiology

• Microsporum canis- dogs

• M. gypseum- dogs, horse, pig

• Trichophyton verrucosum- bovines

• T. equinum- horses

Pathogenesis

The fungi enter in skin through abrasion and the hyphae appear in stratum corneum after germination and invade the hair follicles. The hyphae growth and spore formation in stratum corneum leads to hyperkeratosis and the fungus spreads centrifugally from the point of primary invasion leading to ring shaped lesion (Fig.8.1).

Aspergillosis

Aspergillosis is a fungal disease of poultry caused by different species of Aspergillus sp and characterized by granulomatous nodules in lungs, thickening of air sacs and presence of fungal growth in lungs and air sacs in early age of chicks. It is also known as Brooders pneumonia (Fig.8.1).

Etiology

• Aspergillus fumigatus

• A. flavus

• A. nidulans

• A. glaucus

• A. niger

• A. candidus

Female Genital System

Developmental Anomalies

Agenesis

Absence of ovary, uterus, oviduct and cervix in females. It may be unilateral or bilateral.

Hypoplasia

Complete or partial lack of germ cells in ovaries. Hypoplasia of uterus is related with agenesis of gonads. Ovaries of freemartin are also hypoplastic. Hermaphrodite animal has ovary and testicular tissue both in the gonads.

Hermaphroditism

In hermaphrodites, there is presence of organs of both sexes in same individual animal. Both ovarian and testicular tissue occur in one animal leads to sterility in animal (true hermaphrodite) while in pseudohermaphrodite the gonadal tissue of only one sex is present but there is some degree of development of opposite sex organs.

Developmental Anomalies

Hereditary anemia

Hereditary anemia has been reported in mice due to defects in erythropoiesis or reduced vitality of erythrocytes. Erythropenia along with leucopenia occurs in mouse foetus on 20th day of gestation due to defective autosomal chromosome 4. Sex linked anemia in mouse is hypochromic with deficient bone marrow and occurs in hemizygus males or homozygus females. This anemia occurs due to deficiency of iron as a result of poor absorption from gastrointestinal tract.

Autoimmune hemolytic anemia in foals

It occurs due to incompatible blood group antigens of male and female parents. The mare does not have that blood group antigen but foetus acquires it from father. The foetal blood exposed to dam through placental exchanges leads to induction of antibody production in mares against foetal blood group antigen. These antibodies accumulate in colustrum and when foal suck the milk from mares, they are readily absorbed through G.I. tract of foals in blood and cause destruction of erythrocytes leading to anemia.

Tyzzer’s disease

Tyzzer’s disease is an acute infectious disease of laboratory animals including rats caused by Clostridium spp and Characterized by watery diarrhoea, necrotic hepatitis and death

Etiology

• Clostridium piliforme

• Gram positive, Spore forming, Anaerobe

Pathogenesis

• Horizontal transmission- faecal oral route

• Contaminated feed, water

• Bacteria in gut causing enteritis

Pathology of Muscles

Equine Rhabdomyolysis

It is also known as Azoturia or Monday Morning Disease. The disease occurs in well fed horse after a spell of inactivity. Suddenly after walking a few steps, the horse is unable to move further and feels pain with intense sweating and hardening of muscles.

Etiology

• Accumulation of lactic acid in muscles.

• High glycogen storage.

• Lack of oxygen supply.

Macroscopic features

• Hardening of muscle just like wood.

• Urine is dark brown with myoglobin – myoglobinuria.

• Tonic spasms in muscles.

• Atrophy of affected muscles in chronic cases.

Contagious

Bovine Pleuropneumonia (CBPP) Contagious bovine pleuropneumonia (CBPP) is an infectious disease of cattle caused by Mycoplasma sp. and characterized by cuprous pneumonia, pleurisy and dilation of lymph vessels (Fig.5.1).

Etiology

• Mycoplasma mycoides

Pathogenesis

The infection spreads through inhalation of droplets from infected animals. The recovered animals act as source of infection at least for a period of 3 years. After entering through respiratory tract the organism reaches to bronchioles. It may remain in retropharyngeal gland from where it may spread in whole body. The organism from bronchioles enter into interlobular septa and causes inflammation followed by edema which causes dilation and subsequent thrombosis of lymph and blood vessels prior to development of pneumonic lesions. Death occurs due to anoxia and toxaemia.

Chronic Respiratory Disease (CRD)

Chronic respiratory disease is caused by Mycoplasma gallisepticum and E.coli in birds under poor management and characterized by cloudy air sacs with thickening of their wall, accumulation of cheesy material in air sacs and lungs (Fig.6.1).

Etiology

• Mycoplasma gallisepticum

• E.coli

• Bad management like poor ventilation and inclement weather conditions

• Disease occurs more during winter and rainy season.