eChapters

In genetics, microRNAs (miRNA) are single-stranded RNA molecules of 21-23 nucleotides in length, which regulate gene expression. miRNAs are encoded by genes from whose DNA they are transcribed but miRNAs are not translated into protein (i.e. they are non-coding RNAs); instead each primary transcript (a pri-miRNA) is processed into a short stem-loop structure called a pre-miRNA and finally into a functional miRNA. Mature miRNA molecules are partially complementary to one or more messenger RNA (mRNA) molecules, and their main function is to down-regulate gene expression. They were first described in 1993 by Lee and colleagues in the Victor Ambros lab .

MicroRNAs can be encoded by independent genes, but also be processed (via the enzyme Dicer) from a variety of different RNA species, including introns, 3' UTRs of mRNAs, long noncoding RNAs, snoRNAs and transposons.

The genes encoding miRNAs are much longer than the processed mature miRNA molecule; miRNAs are first transcribed as primary transcripts or pri- miRNA with a cap and poly-A tail and processed to short, 70-nucleotide stem-loop structures known as pre-miRNA in the cell nucleus. These pre- miRNAs are then processed to mature miRNAs in the cytoplasm by interaction with the endonuclease Dicer, which also initiates the formation of the RNA-induced silencing complex (RISC). This complex is responsible for the gene silencing observed due to miRNA expression and RNA interference. The pathway in plants varies slightly due to their lack of Drosha homologs; instead, Dicer homologs alone effect several processing steps. The pathway is also different for miRNAs derived from intronic stem-loops; these are processed by Dicer but not by Drosha. Either the sense strand or antisense strand of DNA can function as templates to give rise to miRNA.

This practical assignment is conceptualized and designed to improve skill of the students on micro teaching for managing teaching situation.

Purpose

To get students acquainted with the micro teaching exercise.

To allow the students for progressive training for the management of teaching situation.

To improve specific micro-teaching skills involved in teaching.

Introduction

Home to the largest population of poor in the world, India has been a natural candidate for experimenting with micro finance as a tool for poverty alleviation. With a nationalized formal banking sector that has emphasized rural and developmental banking for several decades now, India’s involvement with small credit targeted primarily at the rural poor is hardly new. Micro-credit, in the sense of small loans to the poor, is of ancient origin in India. Micro-Finance has, in recent times, come to be recognised and accepted as one of the new development paradigms for alleviating poverty through social and economic empowerment of the poor, with focus on empowering women. Experiences of different anti-poverty and other welfare programmes within the country and elsewhere, have shown that the key to its success lies in the participation of community based organisations at the grassroot level. People’s participation in credit delivery, recovery and linking of formal credit institutions to borrowers through the intermediation of Self Help Groups (SHGs) have been recognised as a supplementary mechanism for providing credit support to the rural poor. Poor people need micro-credit for various and different purposes. It may be to meet the major household expenses, emergency needs or even basic livelihood support.

Skills and knowledge are the driving forces of economic growth and social development of any country. India is moving progressively towards becoming a ‘Knowledge economy’ it becomes increasingly important that the focus is made on advancement of skills and these skills have to be relevant to the emerging economic environment. In old economy, skill development largely meant development of shop floor or manual skills. In new or knowledge economy the skill sets can range from professional, conceptual, managerial, operational behavioral to interpersonal skills and inter-domain skills. In the 21^st century as science progresses towards a better understanding of the miniscule, that is, genes, nano-particles, bits and bytes and neurons, knowledge domains and skill domains also multiply and become more and more complex. Micro enterprise development is one of the strategies seen to bring about pro-poor economic growth.

SUMMARY

Agriculture is the largest user of fresh water for irrigation to fulfill the increasing demand of food, feed, fiber, fuel and other need of ever-increasing population. Water availability to agriculture is characterized by declining in share with time, over exploitation, improper mismanagement, deterioration in quality as well as environment. This could be addressed using sustainable management of irrigation water. As per the Brundtland Commission report of United Nations, sustainable development is the development that meets the needs of the present without compromising the ability of future generations to meet their own needs. Sustainable water management aims to improve water productivity, availability and quality over an area.  Improved and efficient irrigation techniques and practices enhance water application efficiencies, and thereby reduction in associated damage to environment, which include water logging, soil salinity, runoff and leaching of nutrients and other chemicals polluting water sources, and over exploitation of ground water. Micro irrigation systems have been characterized to be the most efficient irrigation techniques. These have efficiencies even more than 90%, doubled water productivity with improved quality of produce, reduced runoff and leaching of nutrients and chemicals to water sources. Application of fertilizer through drip irrigation called fertigation could be adopted for efficient use and saving of fertilizer.  Fertilizer savings of 20-60% and 8-41% increase in yields of horticulture and vegetable crops has been realized through fertigation.

Introduction

Water is the driver of life/ liquid of lift or elixir of life for flora and fauna. It plays an important role in plant as it constitutes about 35-95% part of plant. Water is a mode of transportation of nutrients from roots to shoots and vice-versa, a thermal regulator of temperature inside the plants, source of hydrogen for the reaction of CO₂ for photosynthesis and is essential for maintaining turgidity and servility of plants. Water is required for agriculture as well as for other sectors (domestic, industries, etc) and the demand of water is increasing alarmingly.  Presently agriculture consumes over 80 per cent of total water consumption in India. The country is endowed with many perennial and seasonal rivers. The river, low ever 71 per cent of water resources is concentrated in 36 % of the geographical at area. Water resource of India, population in per capita water ability and estimates of water needs are given below.

Microalgae have long been recognized as good potential sources for biofuel production due to their relatively high oil content and rapid biomass production (Schenk et al., 2008; Hu et al., 2008). These photosynthetic organisms thrive in a variety of aquatic habitats, including lakes, rivers, oceans, and even sewage, demonstrating their adaptability to diverse environmental conditions. They can tolerate a wide range of temperatures, salinities, and pH levels, as well as varying light intensities and aquatic or desert conditions. Additionally, microalgae can grow independently or in symbiosis with other organisms, making them highly versatile for various cultivation systems (Mutanda et al., 2011). Algae are generally grouped into three major categories: Rhodophyta (red algae), Phaeophyta (brown algae), and Chlorophyta (green algae), and are further classified by size into macroalgae and microalgae. Macroalgae are large, multicellular organisms visible to the naked eye, while microalgae consist of microscopic single cells that can be either prokaryotic, similar to cyanobacteria, or eukaryotic, similar to green algae (Fields et al., 2014; Maltsev & Maltseva, 2021). Microalgae are capable of producing a wide array of valuable bioproducts, including polysaccharides, lipids, pigments, proteins, vitamins, bioactive compounds, and antioxidants. They grow at a much faster rate compared to terrestrial crops and can be cultivated on non-agricultural land using non-potable saltwater or wastewater, reducing competition with food crops and ensuring sustainability (Lee et al., 2014). This has made microalgae an increasingly attractive alternative feedstock for biodiesel production, which relies heavily on the high lipid content of microalgae. The majority of these lipids are stored in the form of triacylglycerols, a type of oil that is ideal for biodiesel production. Beyond biodiesel, microalgae can also be utilized in various other energy production pathways. Some microalgal strains can produce hydrogen gas under specific growth conditions, while algal biomass can be combusted like wood or digested anaerobically to produce methane biogas, which can be used for heat and power generation. Additionally, algal biomass can be processed into crude bio-oil through pyrolysis, further expanding its applications as a renewable energy source (Mumtaz et al., 2019).

Nowadays, revolutionary changes in entire globe have led to the economic, cultural and scientific development in our society and have augmented considerable changes in our food habits and life-style. Continuously growing population had noticeably increased the pressure on land, water and energy resources. All these resources are scarce and going to be exhausted in coming decades at the present rate of consumption. Undoubtedly, production of food is more imperative than the production of energy or any other bioproducts. Moreover, with the world population rising to 9 Billion in 2050, with many inspiring to a western life style and diet, this challenge should be addressed urgently (Draismaa et al., 2013). The challenge to produce about 70% more food by 2050 for a growing and increasingly affluent world population has motivated several review papers addressing the different dimensions of the food system and food security (Verburg et al., 2013). Presently, human beings consume approximately 2.5 billion tons of dry weight of harvested crops which include approximately 2.3 billion tons of cereals (e.g., rice, wheat, and corn kernels) and grass from managed pastures (Smil, 2000).

Introduction 
Fossil Fuels like Coal, Coal product, Natural Gas, Petroleum, Crude Oil provide 80% of the world’s energy. However, burning them releases harmful pollutants, including carbon dioxide, nitrogen oxides and the sulfur oxides, contributing to global warming. To combat this, the World is shifting towards cleaner, renewable energy sources called biofuels. Biofuels are made from organic materials like plants and waste, offering several benefits: Renewable and Sustainable, Less greenhouse gas emissions, non-toxic [6]. Common biofuels include are: Biodiesel, Biogas, Bioethanol. These alternative fuels help reduce our reliance on fossil fuels, mitigating climate change and promoting a healthier environment. Biodiesel replaces fossil-based diesel/petrol made through Trans-esterifi cation process. The benefi ts include clean energy, renewable resources and the domestic production. Generations of biodiesel are: First Generation include Edible crops (Soybean, Corn, Sugarcane). Second Generation includes Non-edible biomass(Straw, Hay). Third Generation include Microalgae (70% yield). Fourth Generation include the genetically modifi ed algae and electro-biofuel. [2] Biodiesel production has changed over time. Initially, edible vegetable oils like soybean, corn, sunfl ower and palm oil were used. However this raised concerns: using valuable farmland for fuel instead of food, competing with food production, weather and soil quality affecting the crop yield , fertilizer use releasing harmful nitrous oxide greenhouse gas. To address these issues, focus shifted to non-edible oils and now Microalgae, offering; sustainable, climate-resilient production, no competition with the food crops, reduced greenhouse gas emission, higher oil yield. Microalgae -based biodiesel is the future providing a cleaner, more effi cient alternative.[4]

Introduction 
Fuels are essential to human existence and account for 70% of the world’s energy use. The demand for fossil fuels is rising daily due to the ongoing global population boom and has now reached a crisis point. The world’s current reserves cannot keep up with the projected 40% rise in demand between 2010 and 2040 [1]. According to Energy Information Administration (EIA) statistics, the world’s fossil fuel sources will run out in fewer than 50 years [2]. In addition, burning fossil fuels and living in an industrialised environment have released large amounts of carbon dioxide (CO2), carbon monoxide (CO), sulphur dioxide (SO2), nitrogen oxides (NOx), as well as a significant number of potentially toxic compounds into the atmosphere. This has severely degraded the natural resources that are currently available, including fossil fuels. The human and natural ecology have suffered significant damages as a result of the effects of global warming in recent years [3]. As a result, cutting CO2 emissions is crucial to preventing the negative effects of global warming. Therefore, there has been a greater focus on the improvement of CO2 capture and sequestration systems to significantly lower CO2 emissions from a variety of sources, including vehicle exhaust emissions and industrial flue gas [4] . Fuel production needs to be sustainable in terms of the environment and the economy, meaning it needs to be able to reduce CO2. It is critical to find inexpensive, sustainable, and clean energy options in order to handle the current circumstances. Currently, several traditional renewable energy sources, such as solar, biofuels, hydroelectric, geothermal, or wind are being used with varying degrees of success and detriment. Biofuels are sustainable and renewable energy sources that have emerged as a superior alternative to traditional fossil fuels in energy production. Biofuels have a lot of potential because they are abundant environmentally favourable renewable resources and their production is expanding globally, even though they are still more expensive than fossil fuels [5]. Researchers are actively investigating biomasses as a means of obtaining energy from renewable sources. It is commonly known that through a process called photosynthesis, plants can transform sun energy into chemical forms. Microalgae are fast-growing microorganisms that develop 100 times quicker than terrestrial plants. Their photosynthetic efficiency is also higher (10–50 times greater than terrestrial plants) among biomasses [6]. In less than a day, they can double their biomass. Unicellular microalgae, in contrast to plants, do not divide substantial amounts of biomass into supporting structures like stems or roots, which are costly to create energetically and frequently challenging for harvesting and processing to produce biofuel. Furthermore, they have the ability to adapt to harsh aquatic environments and economically absorb helpful substances. Moreover, 1 kg of microalgae biomass is produced by microalgae cells that fix 1.8 kg of CO2 and have a 50% carbon content [7]. Microalgae can be grown on terrain that is inappropriate for food production because of their high total yield and hence small land use footprint [8]. Microalgal species including Scenedemus sp., Chlorella sp., and Botryococcus sp.; are common, easier to grow than other species and may have higher lipid contents [9].

In the area of pharmaceutical discovery, screening methods continue to play a major role in drug discovery. The screening process is simply testing molecular entities (compounds/natural products) for activity to advance those that exhibit the desired activity. This process has evolved over time in both the testing methods and in the degree of testing. Originally, the screening was done entirely by dosing animals and studying their responses. Then came test tube experiments and now, testing is conducted either with cell lines or with purified proteins in miniaturized test tubes called microplate wells. Screening by microplate has allowed the degree of testing to increase from a very small selected set of compounds to libraries, which contain thousands of test substances. Technological improvements in many areas of science and information technology have led to the evolution of screening methods from time consuming, animal dosing studies to high throughput screening (HTS) methods that have the potential to generate very large datasets of information in a very short time. Today, developments in bioinformatics have opened up the possibility of virtual (in silico) screens for targets where there is sufficient knowledge of the target or of its ligand. High throughput screening has become a pivotal part of drug discovery for identifying potential lead molecules for specific disease targets. The success of screening is measured by several factors including the throughput and costs of the assays, but ultimately by how many of the HTS hits progress forward through the drug discovery pipeline. Miniaturization of assays by conversion from 96- to 384- to 1536- wells to well-less platforms, such as microarrays and the utilization of automated equipments are methodologies implemented to increase the throughput and reduce the cost of the screen.

Soil is the outer loose layer of earth consisting of layers of mineral material (regolith) whose properties differ from one another and these differences are largely due to the variation in biological activities. Soil micro-environment principally comprizes of inorganic particulates (sand, silt and clay) plus certain oxides and hydroxides, plant roots, organic matter, microbial biomass and aqueous and gaseous phases. The uneven distribution of these components provides a great variety of conditions from field to micropores. The interaction of physical and chemical factors contributes to the creation of varied soil habitat and hence determines the composition and activity of soil biota at a particular site and time. Over geological times, microorganisms have had great opportunity to become distributed worldwide. Such growth and development of microorganisms as well as species diversity is of considerable significance. The existing geographic distribution is reflective of long term adaptation of microorganisms to the various environmental conditions. The preferred environment of an organism is usually referred as ‘habitat’.

1.    Introduction    360
2.    Feedstocks for Biodiesel Production    361

    2.1.    Fats and oils, 362
    2.2.    Alcohols, 363
    2.3.    Catalysts and neutralizers, 367

1.    Introduction    468

2.    Biofuel Cell    470

    2.1.    Microbial-based Biofuel Cells, 471
        2.1.1.    Microbial bioreactors producing H2 for conventional fuel  cells, 475
        2.1.2.    Microbial fuel cells producing electrochemically active metabolites in  
                the anodic compartment, 476
        2.1.3.    Microbial fuel cells operating in the presence of artificial electron relays, 477
        2.1.4.    Microbial fuel cells producing electricity during wastewater treatment, 483
        2.1.5.    Microbial fuel cell producing  electricity from acetate or butyrate, 484

1.    Introduction    302
2.    Raw Materials for Alcohol Production    304

    2.1.    Sugary substrates, 306
    2.2.    Starchy residues (cereal grains), 309
    2.3.    Cellulosic materials (crop residues), 314

3.    Microorganisms for Alcohol Production    316

    3.1.    Comparision of ethanol production by bacteria and yeasts, 318

ABSTRACT

Microbes are integral part of the terrestrial ecosystem. Their function ranges from nutrients mineralization, stress alleviation to bioremediation in soils .There is a great possibility of using microbial inoculants as a biological tool for sustainable forestry and agriculture. This review gives an overview on the benefits of microbial technology and their contribution in development of green technology.

Keywords: Green technology, Microbes, AMF, PGPRs, Microbial consortium, Carbon sequestration.

1.     Introduction    424

2.    Conventional Methods of Hydrogen Production    426

3.    Biological Methods of Hydrogen Production    429

    3.1.    Hydrogen production by biophotolysis of water, 430
        3.1.1. Photolysis by cyanobacteria (Blue green algae), 430
            3.1.1.1. Nitrogenase dependent hydrogen production, 434
            3.1.1.2.  Hydrogenase-dependent hydrogen production, 437
            3.1.1.3.  Factors affecting  hydrogen production by cyanobacteria, 440
            3.1.1.4.   Bioreactors for cyanobacterial hydrogen production, 443
            3.1.1.5. Future prospects for cyanobacterial hydrogen production, 446

1.    Introduction    392

2.    Landfill Gas    393

3.    Biogas    394

    3.1.    Benefits of biogas, 394
    3.2.    Potential of biogas, 395
    3.3.    Biogas production system, 396
        3.3.1.    Raw materials, 396
        3.3.2.    Biogas technology, 398
        3.3.3.    Process of anaerobic fermentation for methane generation, 400
        3.3.4.    Conditions for anaerobic fermentation, 404
        3.3.5.    Sludge-algae-methane system, 407
        3.3.6.    Biogas plant, 408

Abstract

Microorganisms execute many key functions that regulate the processes related to the fertility status, nutrient transformation, nutrient conservation, and soil health management that are crucial for agronomic sustainability. Rice soils offer peculiar conditions for microorganisms that support diametrically opposite biochemical reactions under flooded conditions. It is pertinent to note that both reduction and oxidation reactions of several essential nutrients mediated by microbes occur simultaneously in the flooded soils at various depths, profiles and stages of rice crop growth in concurrence. This is peculiar and specific to rice soils as the cultivation process demands changes in water regimes, operative and management practices.

Abiotic Stress in Plants
             
World population is growing at an alarming rate and may reach about 6 billion by the end of the year 2050. Though, the agricultural productivity is also being increased world over, yet it is not keeping pace to meet the demand of food availability. The main reasons for limiting the agricultural productivity are water shortage, depleting soil fertility and mainly various abiotic stresses and climatic change. Minimizing these loses is of primary concern for all nations to cope with the increasing food requirement. The abiotic stress is defined as the negative impact of non living factors on the living organism in a specific environment and abiotic stress is the most harm full factor concerning the growth and productivity of crops worldwide. Researches have shown that abiotic stressors are at their most harm full when they occur together in combination of abiotic stress factors (Mittler, 2006; Bianco and Defez, 2011). Numerous stresses caused by complex environmental conditions i.e. drought, too high and too low temperatures, freezing, salinity, UV light, heavy metals and recently through smog (air pollution) leading to substantial crop losses worldwide (Mahajan and Tuteja, 2005). The abiotic stresses might increase in the near future even because of global climatic change.

1.    Introduction    272
2.    Alcohols    273

    2.1.    Methanol, 274
    2.2.    Ethanol, 277
    2.3.        Butanol, 283

3.    Biodiesel    284
4.    P-series fuels

Microbial Based Formulations examines preparations produced through beneficial microorganisms, fermentation, and indigenous microbial resources. It covers Waste Decomposer, Effective Microorganisms, Fermented Plant Extract, EM-Bokashi, Indigenous Microorganisms, Fermented Plant Juice, Fermented Fruit Juice, Oriental Herbal Nutrient, and lactic acid bacteria. Water-soluble potassium, phosphoric acid, and calcium preparations, brown rice vinegar, loess powder, fermented seawater, and microorganism-enriched mixtures are also discussed. The chapter demonstrates how microbial activity and fermentation can transform locally available materials into agricultural inputs. Together, these formulations illustrate approaches for nutrient management, plant growth support, compost enrichment, and ecological farming using biologically mediated processes and farm-level resources. for preparation.

ABSTRACT

Biodiversity is often understood in terms of wide variety of plants, animals and micro-organisms existing on the earth. So far, about 1.75 million species have been identified, mostly small creatures such as insects. According to scientific estimates, there are actually about 13 million species, although range from 3 million to 100 millions. The present article deals with the importance and threats of biodiversity as well as tries to highlights the role of government and non-government sectors in conservation of biodiversity. The initial part of the article indicates the concept of evolution and biodiversity, wherein we have tried to identify the present scenario. We find that a wide range of microbial, plant and animal species are sources of various biological products for human use and welfare. These species are getting lost or extinct due to lack of conservation over a period of long time. Therefore, an effort has been made to highlight the conservation acts and important rules and regulations for protecting and conserving the bio-resources.

ABSTRACT

Soil borne fungal pathogen causing root diseases of vegetables are difficult to control by chemical methods. The existing biocontrol bacteria are not very effective in control of soil borne fungal pathogens. As such very less number of bacterial biopesticide is available commercially to control the fungal pathogens. Increasing concerns in recent years about human health and environmental problems due to chemical pesticides, couple with increasing pest resistant to chemical, have led to a reappraisal of our approach to control pest and disease in crops. The trends now are towards a management concept in which the best combination of tools is used to manage plant diseases below economic thresholds with minimal risk to human health and environment. The modern management concept includes extensive use of biocontrol agents which are harmless to non-target organisms. Development of effective technology for control of pest and disease by using microbial resources of a region to enhance the quality of ecosystem is a potential alternative approach to chemical control of plant diseases. In such strategy, search for microorganisms and biological system is an important prerequisite prior to development and practical exploitation of biocontrol. Rhizosphere microorganisms are shown to be perspective candidate for biocontrol agent as they provide the front line of defense for plant roots against the attack by various plant pathogens causing the most diseases of vegetables and crops. Chemical control of soil-borne fungal pathogen had been the subject of growing concern because of their adverse effect on the environment and emergence of chemical pesticide resistant to plant pathogen, moreover, soil borne pathogens are very difficult to control. Crop rotation, breeding for resistant plant varieties and application of pesticides are insufficient to control root diseases of important plants because they survive as sclerotia and has got wide host range.

Abstract

Microorganisms inhabiting in the rhizosphere play a vital role in ecosystem functioning. Rhizosphere is an area around the root surface where pathogenic and beneficial microorganisms repose and influence the plant growth and health. These microbial groups of bioagents found in the rhizosphere include bacteria, fungi, nematodes, protozoa, algae and micro-arthropods. Because of their rich diversity, complexity of interactions and numerous metabolic pathways, microbes are an amazing resource for biological activity. These microorganisms require organic matter for their growth and activity in soil and provide valuable nutrients to the plants and hence maintaining the plant health. The most promising fields for the use of bioinoculants are agriculture, horticulture and forestry. There are many reports on the inoculation of bioagents in agriculture and horticulture crops but only a few reports are available in forestry. This article is an overview on various bioinoculants which are used during inoculation and a compilation of scattered reports of bioinoculants in forestry only.

Soil microbial biomass is an important parameter linking the plants to soil. It comprises about 2-3% of the total organic carbon in the soil and recognized as an important source of nutrients to plants. It is also a dynamic component of the soil associated with several functional properties of the terrestrial ecosystem. It represents the fraction of the soil responsible for the energy and nutrient cycling and the regulation of organic matter transformation.

Microbial biomass is a small but labile and living component of soil organic matter that is involved in most bio-geo-chemical processes in the terrestrial ecosystem. It interacts with crop productivity by regulating nutrient availability as a source; determining soil carbon storage- sink; and contributing to the atmospheric CO₂ from respiration. Thus it is the main agent that controls the flow of carbon and cycling of nutrient elements.

There is a close relationship between soil microbial biomass, decomposition rate, and nitrogen mineralization. It is also positively correlated with grain yield in organic farming and also contributes to soil structure and stabilization. Thus, there is the immense importance of microbial biomass in soil fertility as well as in agriculture.

Abstract
Microbial bioprocesses are essential for maintaining the vitality and functionality of aquatic ecosystems, playing a key role in important biogeochemical cycles including those of carbon, nitrogen, and sulfur.
Bioprocesses such as bioremediation, biofertilization, biofilms, biofloc technology, probiotics, bio-bleaching, bio-corrosion, and bio-fouling. these processes are applied in different domains including wastewater treatment, aquaculture, and environmental clean-up. In wastewater treatment, techniques like activated sludge and biofilms are utilized for the removal of nutrients and the breakdown of pollutants. In aquaculture, microbial management and probiotics help in sustaining water quality and improving the health of aquatic species. In bioremediation, microbes areemployed to tackle contaminants like heavy metals, oil spills, and pesticides, with advancements in microbial consortia enhancing the effectiveness of pollutant-specific degradation. the role of microorganisms as bioindicators and biosensors. Recent developments in microbial biotechnology feature progress in genetically engineered microbes, the use of synthetic biology, and the implementation of microbial fuel cells (MFCs) for generating bioenergy. Challenges and limitations, including environmental constraints, the potential risks of genetically modified organisms, and the feasibility of large-scale applications.
Keywords: Bioremediation, Biofertilization, Biofilms, Biofloc, Probiotics, Bio-Bleaching, Bio-Corrosion, Bio-Fouling

1. Introduction
Pharmaceutical pollution has emerged as a significant global concern, raising alarms about its potential impacts on ecosystems and human health. The journey of pharmaceutical compounds from their point of use to contamination of water bodies reveals a complex and interconnected web of anthropogenic activities. From manufacturing plants to individual households, these pollutants persistently infiltrate aquatic systems, creating a growing

13.1 Introduction

Many changes have occurred in egg production and processing, as well as in the egg itself, over the last 40 years. All of these changes have contributed to the microbial challenges of the egg that we face today. In the past, production traits including egg size, feed conversion and egg output have received the majority of attention in genetic selection of laying hens. Microbial integrity hasn’t been given much attention. Until the 1990s, food safety concerns associated with shell eggs were not considered. Eggs were thought to be pathogen free until they were cracked.

Fungi include a large group of organisms and there are about 72,000 described species and the total number of species in the world may be as high as 1.5 million (Hawksworth et al., 1995). The infections that these fungi cause on a group of organisms viz. plants, animals, insects etc. may or may not be beneficial depending upon the type of host infected. With reference to insects, fungal infections in pest insects are beneficial which can be used effectively in biocontrol programmes. On the other hand, fungal infections in beneficial insects are harmful.

The entomopathogenic or entomogenous fungi mainly include those genera of fungi that associate with insects and some arthropods in a variety of ways. The association with the insects may be saprophytic, commensalistic, parasitic or pathogenic with the insect host. Some entomopathogenic fungi like Coelomomyces are obligate pathogens which can’t be cultured outside a living host, but most of them are however, facultative pathogens capable of growing without host insect. More than 750 spp of fungi, mostly deuteromyctes and entomophthorales from about 100 genera are pathogenic on insects and many of them offer great potential for pest management. The entomopathogenic fungi which have been most intensively investigated include Beauveria, Metarrhizum, Paecilomyces, Entomophthora, Verticillium, Hirsutella, Eryina, Mefarrhizium etc. Out of them Beauveria and Mefarrhizium have been extensively used in large scale for the control of several crop pests.

Abstract

Now a days, the public has become more sensitive towards the protection of the environment and general awareness has increased about the adverse effects of industrial effluents contaminate with various pollutants, including dyes on the environment. Dyes are an important class of synthetic organic compounds used in many industries, especially textiles. Consequently, they have become common industrial environmental pollutants during their synthesis and later during fiber dyeing. Textile industries are facing a challenge in the field of quality and productivity due to the globalization of the world market. The dyes, which are widely used in textile industries when left in water bodies without any treatment cause environmental pollution and in turn are toxic, carcinogenic and mutagenic. The efficient treatment of the sludge from the industries is not economical and a challenging task. Currently, a number of different technologies and methods such as biological, physical and chemical are widely used for the removal of dyes. The treatment technologies for the removal of textile dyes from the textile wastewater found that over the past two decades interestingly focused on biodegradation methods such as microbial decolourization, enzymatic decolourization, adsorption by microbial biomass (living or dead) and bioremediation systems as a better alternative as the available physico-chemical methods.

Biodiversity is the variety of life in different microbes, animals, plants and their genes present in the ecosystem. Soil provides a vital habitat and environment primarily for microflora such as bactria, actinomycetes, fungi as well as microfauna viz. protozoa and nematodes, mesofauna such as microarthopods, enchytraeids, macrofauna such as earthworms, beetles, termites and millipedes (Gaur 2006a).

Biodiversity and soil are interlinked which interact closely with wider biosphere. Conversely, biological activity is ofprime importance in influencing the physical and chemical conditions of soil (Bardgett 2005). The level of soil biological activity is, therefore, affected by soil type and also depends on the use of management practices which contribute to crop productivity.

Soil biodiversity and soil processes

A majority of soil organisms participate in various processes which are essential for the biosphere. The main ecological function is to decompose organic matter largely derived from the plant and animals residues Which consist of celluloses, hemicelluloses and lignin, and to supply plant nutrients to support growth. These organisms participate in various nutrient cycles and processes such as nitrogen mineralization, nitrification, nitrogen fixation, transformations ofphosphorus, potassium, sulphur, calcium, magnesium, iron and micronutrients (Pankhurst et al 1997). They participate in bioremediation of harmful compounds such as heavy metals and pesticide residues (Gaur 2006 b). They not only maintain physical and chemical conditions of soil, but also regulate emissions / assimilations of green house gases and suppress soil borne diseases and pests

Introduction

In poultry, the intestine is home to trillions of microorganisms, with bacterial concentrations reaching up to 10¹² bacteria per gram of digesta. In a healthy digestive system, this microbial community is highly diverse and metabolically active, supporting crucial functions in digestion, immune defense, and overall health. The gastrointestinal tract (GIT) of a newly hatched chick begins as a sterile environment but quickly develops a complex microbiota as the bird matures. The composition of gut microbiota is highly variable, shaped by environmental factors, diet, the genetic makeup of the host, and other influences. This dynamic microbiome plays a pivotal role in nutrient absorption, disease resistance, and growth efficiency, making it a central focus in poultry health management and productivity enhancement.The health and productivity of poultry are fundamentally influenced by the gut microbiome, which shapes digestion, immunity, and growth potential. Microbial diversity variesacross several poultry species, including broilers raised intensively, native chickens in free-range conditions, and unique species such as Guinea fowl, Kadaknath, and red jungle fowl. Using advanced metagenomicsanalysis of microbial diversity, structure, and function, highlighting the implications of microbiota composition on poultry health and productivity possible. The gut microbiota is increasingly recognized as a major determinant of health and productivity in poultry. It not only influences nutrient absorption and metabolism but also plays a critical role in immune response and pathogen resistance. Intensive farming practices have altered gut microbial ecosystems in commercial broilers, often reducing diversity compared to native breeds and heritage species raised in field conditions.

The traditional fermentation process is an uncontrolled system and is usually carried out in a quite unhygienic environment. As the process of fermentation is brought about by the microbial activity so in the traditional system of fermentation there is every possibility of inclusion of microorganisms which is not desired in or that can cause spoilage to the finished product. Although no incidents of food poisoning has been reported due to consumption of fermented fish there are also no reports of any clinical investigations in this regard. A study on the microflora of such a fermented fish product is useful to understand -how safe is the product for consumption. The diverse groups of microorganisms that are present in the fermented fish products will provide information about their characteristic nature -beneficial or pathogenic, their contribution towards production of flavour and aroma, etc. The environment, however, is the key factor for the so called ‘microbial diversity’ among different fermented fish products round the globe. Moreover, the aquatic habitat, processing technique and of course, the handling during processing are the other factors that equally make a way for the introduction of a variety of microorganisms in the finished product. A study on different curing stages i.e. fresh, semi-cured and fermented, is therefore necessary to understand the pattern of microbes and become evident the role played by the microbes during fermentation.

1.    Introduction    129
2.    Soil Microbiology    129

    2.1.    Bacteria, 130
    2.2.    Fungi, 132
    2.3.    Algae and Cyanobacteria, 132
    2.4.    Protozoa, 132
    2.5.    Viruses, 135

3.    Water Microbiology    133
4.    Microbial Associations    133

    4.1.    Neutral interactions, 133
    4.2.    Positive interactions, 133
    4.3.    Negative interactions, 133

Several attempts have been made to detect the biopotentials of microorganisms with reference to their ability to produce various enzymes with a view to use them in industrial processes and bioremediation applications. Enzymes are increasingly used as a new route to synthesize food ingredients such as flavours, emulsifiers, sweeteners, food additives, nutrients. With the advent of genetic engineering, a wide range of enzymes has become available on a large scale and this has increased the scope of enzyme technology.

MICROBIAL ENZYMES: Enzymes are proteinaceous complex organic catalysts of biological origin and vital constituents of cells. Microbes produce a variety of enzymes, intracellular and extracellular enzymes. Most of the microbial enzymes produced for commercial usage are extra cellular enzymes. Extracellular enzymes are secreted outside the cell and hydrolyze polymeric substances. Amylases and proteases are enzymes of economic importance. At present over 60 enzymes are in commercial use, of which three-quarters are hydrolytic enzymes. Commercial production of microbial enzymes utilizes a variety of fungi, yeasts and bacteria. The composition of the medium, genetic stability of the microbial strain and physical and chemical factors of fermentation influence the production of a particular enzyme.

Enzymes catalyze a variety of reactions during processing and preservation of food products and form a large group of processing aids. Food industry utilizes enzymes in the production of bakery items, dairy products, fruits and vegetables juices and products, tenderization of meat, modification of oils and fats, flavour production and preservation of food products. Enzymes have also found use in the manufacture of ingredients like glucose, high fructose syrup, citric acid, colour and flavour constituents.

The study of soil microorganisms involves various complicacies when compared with those of plants or animals aboveground. The complicated heterogeneous environment existing in soil and the varied growth behaviour of microbial populations in soil have necessitated the development of special techniques to study the microbes and their metabolic diversity, individually and holistically without disturbing their natural habitat. With the gradual improvement in microscopy since its discovery in 1667 and also with the greater understanding of the nature of soil microbes and their properties in relation to total ecosystem function, the concept of studying microbes in isolation has enormously changed. Microscopes have helped in magnifying these, otherwise invisible, minute creatures within the limits of naked eyes.

SINGLE CELL PROTEIN (SCP) AND PROTEIN DEFICIENCY

Protein is an essential component of diet. The greatest single problem in the world today is global food protein shortage. Having adequate quantity of food is only one side of the picture, but the most important aspect is the supply of balanced and nutritious food. All efforts are being made to increase the food production through modern methods of farming. But very little attention is being paid towards protein requirements and production. Approximately half of world population suffers from the protein deficiency disease called ‘Kwashiorkor’ and children with poor protein are victims of this disease.

Usually, cereals have low protein values while protein rich pulses are not available in desired quantities due to poor yields and high costs. The good quality protein available in fish, meat, poultry, and eggs is not available due to poor economic condition as well as varied dietary habits. With the current system of production, agriculture cannot be relied upon to feed an ever increasing world population. Hence there is an urgent need to find other protein sources. The best potential is seen in microbial protein or single cell protein (SCP), a new source of protein independent of agriculture.

DEFINITION: The dried cells of microorganisms such as bacteria, fungi, yeasts, algae that are grown in large scale culture systems as proteins for human or animal consumption are collectively known as "single cell proteins".

2.1 Introduction 
The world is encountering a severe power and environmental crisis. Adopting sustainable progress is the best means to protect our environment and maximise the use of available resources. The urgent issues, encompassing diverse types of pollution and carbon emissions, highlight the necessity to shift towards renewable energy sources. This shift is essential for diminishing our dependence on fossil fuels, addressing the on-going challenges regarding climate change, and confronting the exhaustion of current energy reserves. Furthermore, mitigating water pollution is an essential component of ensuring ecological sustainability [1,2]. Water supplies are rapidly being contaminated due to diverse contaminants including heavy metals, and harmful chemicals. While industrialization is critical for societal growth, it is critical to recognise the negative environmental consequences caused by numerous processes that emit hazardous substances. Improper disposal of untreated wastewater can negatively impact ecology and biodiversity [3]. As a result, it is critical to use environmentally friendly and sustainable treatment methods that adhere to green development principles. This will bolster industrialization efforts while upholding water pollution safeguards for recovery and reuse. Given the prevailing energy crisis, traditional wastewater treatment facilities have become financially unsustainable due to their high energy consumption. Traditional wastewater treatment is both costly and demands substantial energy resources. Furthermore, these approaches fall short of efficiently eradicating recalcitrant organic waste, heavy metals, and other persistent contaminants. Moreover, many of these treatment processes require regeneration. Microbial fuel cell (MFC) technology has emerged as an ecofriendly treatment option capable of effectively eliminating stubborn organic pollutants and heavy metals over the long term. Microbial fuel cells are chosen over other current treatment methods because to their reduced energy needs and lower chemical usage [4,5]. In addition to lowering energy usage, MFCs possess the ability to produce ample bioenergy, which can help alleviate the energy shortage. This provides a cleaner alternative for generating renewable energy in favour of sustainable development and environmental protection as depicted in Figure 2.1.

Introduction

Hippocrate, an ancient physician, a great thinker and also often referred as father of medicine, for the first time conceive the idea nearly 2,500 years ago that a disease is caused due to natural factors such as environmental factors, diet, and living habits. He advocated the secret of healthy living in healthy food in his famous quote “Let food be thy medicine and medicine be thy food”. But unfortunately, this wisdom about food has faded with the time and we became dependent on synthetic medicines and drugs for even life style disorders. In the last century, research advancement in the field of food science and nutrition established food not only as a source of nutrition but also a source of active food components that aid specific functions and rejuvenated the Hippocrates concept. According to the Department of Health and Human Services, USA, daily diet of a person, plays a crucial role in 5 of 10 diseases which are the leading causes of death, such as diabetes (noninsulin dependent or type 2), stroke, coronary heart disease (CHD), specific type of cancer, and atherosclerosis. In the mid-1980s, term “functional food” was introduce in Japan and defined as food that contain active components either from plant or animal origin and provide physiological benefits in addition to the basic nutritional needs.

Genetics is the study of what genes are, how they carry information, how their information is expressed, and how they are replicated and passed to subsequent generations or other organisms.

DNA in cells exists as a double-stranded helix; the two strands are held together by hydrogen bonds between specific nitrogenous base pairs: A-T and C-G.

A gene is a segment of DNA, a sequence of nucleotides, that code for a functional product, usually a protein.

When a gene is expressed, DNA is transcribed to produce RNA; mRNA is then translated into proteins. This is also referred as Central Dogma of Life. The DNA in a cell is replicated before the cell divides, so each daughter cell receives the same genetic information.

The term growth for bacteria and other microorganism usually refers to changes in the total population rather than an increase in size or mass of an individual organism. As the mechanism of conservation and dissipation of heat generated during metabolism lacks in bacteria, the enzyme system in bacteria gets directly influenced by temperature. The purpose of studying the bacterial growth curve is a) to become familiar with the population growth dynamics of bacterial culture and b) to plot a growth curve and determine the generation time of bacterial culture.

A number of methods are now available for measuring bacterial growth. Some important ones are

1)By colony counting or cell counting

2)By weighing the cells

3)By cell activity (turbidity method)

Abstract

Discovery of the agricultural utility of microbes during the later part of the eighteenth century, led to the formulation and utilization of superior microbial strains as biofertilizers, for a wide variety of crops and growing conditions across the world. Though microbial inoculants have been in usage for almost two centuries, they are yet to capture the collective imagination of farmers across the globe, which is essential to meet the larger objective of reducing chemical input usage in cropping systems. One probable reason for this is the existence of large growing tracts that are subject to various abiotic stresses of atmospheric and edaphic origin, which limit the proliferation and efficiency of the microbial strains that are commonly used in inoculant production.  This is obvious, since unlike chemical fertilizers, microbial cells being living systems need to grow and thrive in the introduced eco-systems in order to achieve the desired effects of inoculation. But unfortunately microbial inoculant technology has largely adopted the one size-fit all mindset, which had led to failures of microbial inoculants especially in abiotically stressed growing environments. In such a scenario it would be wise to adopt a location or region specific approach for the selection of superior and locally adapted microbial strains for inoculant production.

Introduction

The increasing concern about the long-term productivity of agro ecosystems has emphasized the need to develop a management strategy that maintains and protects the soil resources. This is directly related to the maintenance of the level of soil organic matter and nitrogen status, which are the critical components of soil productivity. These parameters can change over time due to crop management practices such as cultivation, crop rotation, residue management or fertilization which, in turn, can influence the long-term sustainability of ecosystem. Application of chemical fertilizer is one of the most expensive inputs in agriculture. About 65% of the applied nitrogenous fertilizer is lost from the plant–soil system through gaseous emissions, runoff, erosion and leaching which causes greenhouse effects and nitrate pollution of surface and ground water (Rejesus and Hornbaker 1999). Similarly, P applied in soil is rapidly fixed and results in low P availability for plant production. In this context, the deployment of microbial biofertilizers promise increasing soil nutrient availability in integrated nutrient management system.

The increase in population and global industrialization has led to environmental pollution, which is a significant threat to the health of the ecological system. Different measures are recommended to remediate polluted areas effectively. The applications of nanotechnology in medicine, cosmetics, sports, textiles, and pharmaceuticals have increased over the years. Another approach to remediate the adverse effects of pollutants on the environment is by utilizing nanotechnology for contaminant remediation. Biogenic nanoparticles are tiny particles produced by biological entities such as fungi, bacteria, yeast, and algae. These biogenic nanoparticles are efficient in removing pollutants like heavy metals, pharmaceutical waste, dyes, and hydrocarbon waste. 

1.    Introduction    174
2.    The Thermodynamic and Mechanistic basis of Cellular Metabolism    174

    2.1.      Adenosine triphosphate, 175
    2.2.    Coenzyme A, 176
    2.3.    Modes of ATP synthesis, 177

3.      Components of Electron Transport Chain    181

    3.1.    Electron carriers in ETC, 182
    3.2.    Complex I - NADH dehydrogenase (NADH coenzyme Q reductase), 185
    3.3.    Complex II - Succinate - coenzyme Q reductase, 187
    3.4.    Complex III - Coenzyme Q - cytochrome c reductase, 187
    3.5.    Complex IV - Cytochrome c oxidase, 188
    3.6.    ATP synthese, 188